DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cf2 and wor

DIOPT Version :10

Sequence 1:NP_001350854.1 Gene:Cf2 / 33692 FlyBaseID:FBgn0000286 Length:537 Species:Drosophila melanogaster
Sequence 2:NP_476601.1 Gene:wor / 34906 FlyBaseID:FBgn0001983 Length:548 Species:Drosophila melanogaster


Alignment Length:309 Identity:81/309 - (26%)
Similarity:123/309 - (39%) Gaps:71/309 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   199 QQEAAVTPDDQL------PAMAPRDMRLTPEE--------QHHQQQLQAEHHHQQQH------QQ 243
            ::|....|..||      |...|.|:.:|...        |:..:.|.:..|...||      .:
  Fly   183 KEEIPPIPSPQLFYPPPTPLAEPEDLSVTQRRVLSENMNLQNVARALLSMQHMAPQHAPPPIDME 247

  Fly   244 QQQQQQQQQELLEQQQREMQEQAQQQQVHHHQQDQDLAGDQVALKVPPLTVKLNK-NANGGAIVS 307
            :.|:.|...:|..:...::..|.||                           .|| .|....:|.
  Fly   248 EDQENQDINQLKIKSSNDLYYQCQQ---------------------------CNKCYATYAGLVK 285

  Fly   308 HPQV---------IIKEEPLSLSDSGDVVNSVPVYAIQANPGVPAP--ASSGVLVGTQTVPADLA 361
            |.|.         ||:.:|   ..||.:|:.......||:..:.|.  ||:..:.....||    
  Fly   286 HQQTHAYESTEYKIIRSQP---GGSGAIVDQTEFCTDQASALIQAANVASAQSMQKPVGVP---- 343

  Fly   362 HKIRHKCPDCPKTFKTPGTLAMHRKIHTGEADATPKERPYTCSYCGKSFTQSNTLKQHTRIHTGE 426
               |:.|.||.|::.|...|:.|::.|...|:....::.::|..|.|::.....||.|.|.||  
  Fly   344 ---RYHCQDCGKSYSTYSGLSKHQQFHCPSAEGNQVKKVFSCKNCDKTYVSLGALKMHIRTHT-- 403

  Fly   427 KPFHCGYCEKSFSVKDYLTKHIRTHTGEKPYTCPYCDKRFTQRSALTVH 475
            .|..|..|.|:||....|..||||||||||::|.:|::.|..||.|..|
  Fly   404 LPCKCPICGKAFSRPWLLQGHIRTHTGEKPFSCQHCNRAFADRSNLRAH 452

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cf2NP_001350854.1 COG5048 <366..>473 CDD:227381 40/106 (38%)
C2H2 Zn finger 368..388 CDD:275368 7/19 (37%)
C2H2 Zn finger 403..423 CDD:275368 7/19 (37%)
C2H2 Zn finger 431..451 CDD:275368 9/19 (47%)
zf-H2C2_2 443..468 CDD:463886 14/24 (58%)
C2H2 Zn finger 459..480 CDD:275368 7/17 (41%)
worNP_476601.1 C2H2 Zn finger 270..290 CDD:275368 8/46 (17%)
C2H2 Zn finger 317..334 CDD:275368 5/16 (31%)
zf-C2H2 345..367 CDD:395048 7/21 (33%)
C2H2 Zn finger 347..367 CDD:275368 7/19 (37%)
zf-C2H2 380..402 CDD:395048 7/21 (33%)
C2H2 Zn finger 382..402 CDD:275368 7/19 (37%)
zf-C2H2 406..428 CDD:395048 9/21 (43%)
C2H2 Zn finger 408..428 CDD:275368 9/19 (47%)
zf-C2H2 434..456 CDD:395048 7/19 (37%)
C2H2 Zn finger 436..456 CDD:275368 7/17 (41%)
C2H2 Zn finger 464..481 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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