Protein Alignment: Traf4 and Traf3

• Sequence 1: NP_477416.1
• Gene: Traf4
• FlyBaseID: FBgn0026319
• Length: 486
• Species: Drosophila melanogaster
• Sequence 2: NP_001102194.1
• Gene: Traf3
• RGDID: 1304633
• Length: 567
• Species: Rattus norvegicus
• Alignment Length: 523
• Identity: 136/524 (26%)
• Similarity: 206/524 (39%)
• Gaps: 162/524 (31%)

  Fly   117 DELRKLKGHLNACKHDATQCPN----------------KCGAQIPRIMMTDHLQYTCTMRRTRC- 164
            |:.:..|..|..|....|:|.:                ||.|....|:.....:..|..|....
  Rat    48 DKYKCEKCRLVLCNPKQTECGHRFCESCMAALLSSSSPKCTACQESIIKDKVFKDNCCKREILAL 112

  Fly   165 -EFCQSEFSGAGLEEH----------NGSCGQEPVYC-EAKCGQRILRGRMTLHKSKDCAKRLRR 217
             .:|::|  |.|..|.          ...|..|.:.| .|.|.:::||..:..|..|.|..|...
  Rat   113 QIYCRNE--GRGCVEQLTLGHLLVHLKNECQFEELPCLRADCKEKVLRRDLRDHVEKACKYREAT 175

  Fly   218 CAHCQREFSADTLPLHA-AQCPRAPLACPQRCDAGPIPRGELEAHLRDECQSLAVSCSFKEAGCR 281
            ||||:.:....||..|. ..||...::||.:|....:.|.||.||| .||.:...:||||..||.
  Rat   176 CAHCKSQVPMITLQKHEDTDCPCVVVSCPHKCSVQTLLRSELSAHL-SECVNAPSTCSFKRYGCV 239

  Fly   282 FKGPRQMLEAHLESNAAAHLSLM----------VAL----SSRQGQQIQML-------------- 318
            |:|..|.::||..|:|..|::|:          |:|    |..:.:.||.|
  Rat   240 FQGTNQQIKAHEASSAVQHVNLLKEWSNSLEKKVSLLQNESVEKNKSIQSLHNQICSFEIEIERQ 304

  Fly   319 ---------------------------------------------KSAVSKL------------- 325
                                                         ||:|..|
  Rat   305 KEMLRNNESKILHLQRVIDSQAEKLKELDKEIRPFRQNWEEADSMKSSVESLQNRVTELESVDKS 369

  Fly   326 ----------------------------------------SINYTGTLLWKITDWSAKMAEARGK 350
                                                    :.:|.|.|:|||.|:..:..||...
  Rat   370 AGQAARNTGLLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMG 434

  Fly   351 DGLELVSPPFYTSQYGYKLQASMFLNGNGPGENTHVSVYIKVLPGEYDALLKWPFSHSITFTLFE 415
            ..|.|.|.||||..:|||:.|.::|||:|.|:.||:|::..::.|||||||.|||...:|..|.:
  Rat   435 KTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMD 499

  Fly   416 QGAQSGQGGVAESFVPDPTWENFQRPSNEPDQLGFGFPRFISHELLHSRPFIKGDTVFLRVKVDP 480
            ||  |.:..:.::|.|||...:|::|:.|.: :..|.|.|::..:|.:..:||.||:|::|.||.
  Rat   500 QG--SSRRHLGDAFKPDPNSSSFKKPTGEMN-IASGCPVFVAQTVLENGTYIKDDTIFIKVIVDT 561

  Fly   481 SKI 483
            |.:
  Rat   562 SDL 564

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Traf4	NP_477416.1	zf-TRAF	125..179	CDD:280357	15/72 (21%)
		zf-TRAF	233..292	CDD:280357	24/60 (40%)
		MATH_TRAF4	331..479	CDD:239750	60/148 (41%)
Traf3	NP_001102194.1	zf-C3HC4	55..90	CDD:278524	7/35 (20%)
		zf-TRAF	135..191	CDD:280357	17/56 (30%)
		zf-TRAF	196..246	CDD:280357	22/51 (43%)
		BBP1_C	<262..>320	CDD:291921	6/58 (10%)
		Spc29	<306..>365	CDD:293687	4/59 (7%)
		MATH_TRAF3	377..562	CDD:239746	62/188 (33%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
eggNOG	1	0.900				E1_KOG0297
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010				D391991at33208
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.910