DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shaw and Kcnk3

DIOPT Version :10

Sequence 1:NP_001137782.1 Gene:Shaw / 33599 FlyBaseID:FBgn0003386 Length:619 Species:Drosophila melanogaster
Sequence 2:NP_203694.1 Gene:Kcnk3 / 29553 RGDID:61997 Length:411 Species:Rattus norvegicus


Alignment Length:151 Identity:35/151 - (23%)
Similarity:54/151 - (35%) Gaps:54/151 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   338 RASAKELTLLV---FFLVLGIVIFASLVYYAERIQP----------------------------- 370
            |.:.:.|.|:|   .:|::|..:|.:|....|.|:.                             
  Rat     3 RQNVRTLALIVCTFTYLLVGAAVFDALESEPEMIERQRLELRQLELRARYNLSEGGYEELERVVL 67

  Fly   371 --NPHNDFNSIPLGLWW--------ALVTMTTVGYGDMAPKTYIGMFVGALCALAGV-LTIAL-- 422
              .||.      .|:.|        |:..:||:|||..||.|..|.......||.|: ||:.:  
  Rat    68 RLKPHK------AGVQWRFAGSFYFAITVITTIGYGHAAPSTDGGKVFCMFYALLGIPLTLVMFQ 126

  Fly   423 PVPVIVSNFAMYYSHTQARAK 443
            .:...::.|..|..|   |||
  Rat   127 SLGERINTFVRYLLH---RAK 144

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawNP_001137782.1 BTB_Shaw-like 24..135 CDD:349723
Ion_trans 188..439 CDD:459842 32/145 (22%)
PRK14959 <418..>585 CDD:184923 8/28 (29%)
Kcnk3NP_203694.1 Ion_trans_2 <73..132 CDD:462301 17/64 (27%)
Ion_trans_2 167..243 CDD:462301
Blue background indicates that the domain is not in the aligned region.

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