DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sob and osr1

DIOPT Version :10

Sequence 1:NP_476882.1 Gene:sob / 33581 FlyBaseID:FBgn0004892 Length:578 Species:Drosophila melanogaster
Sequence 2:NP_001006079.1 Gene:osr1 / 450059 ZFINID:ZDB-GENE-070321-1 Length:264 Species:Danio rerio


Alignment Length:216 Identity:98/216 - (45%)
Similarity:115/216 - (53%) Gaps:46/216 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   265 PLPSIGTVSAAVAAA-----AAAAAAAASQQAALDCATAAELAAECDLPLLDGEDALSFEAGDLD 324
            |||||......|..|     ...:.|::..:...|.|..|..|.:.|  .|..|| ||...|.:.
Zfish    80 PLPSIPLFPHLVQPAKQESSGPGSGASSKSKPRFDFANLAAAATQDD--ALKAED-LSTNNGHVR 141

  Fly   325 SSYGSFMFNPSAFSQAETDSALHSLQATMYQDKMSVISGAAGGVGAGAVGGLEEAGSSAAAAAAQ 389
            |.....:.:.:..|..|...:...|.:                                      
Zfish   142 SPSLGCLLDVAKLSSPERKPSRGRLPS-------------------------------------- 168

  Fly   390 RSKKQFICKFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDHRYIHSKEKPFKCA 454
            ::||:|:||||.|.||||||||||||||||||||:||||.||||||||||||||||||||||||.
Zfish   169 KTKKEFVCKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 233

  Fly   455 ECGKGFCQSRTLAVHKILHME 475
            ||||||||||||||||.|||:
Zfish   234 ECGKGFCQSRTLAVHKTLHMQ 254

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sobNP_476882.1 COG5048 <389..529 CDD:227381 75/87 (86%)
C2H2 Zn finger 397..417 CDD:275368 17/19 (89%)
zf-H2C2_2 409..434 CDD:463886 22/24 (92%)
C2H2 Zn finger 425..445 CDD:275368 18/19 (95%)
zf-H2C2_2 437..460 CDD:463886 21/22 (95%)
C2H2 Zn finger 453..473 CDD:275368 17/19 (89%)
C2H2 Zn finger 481..501 CDD:275368
C2H2 Zn finger 509..529 CDD:275368
osr1NP_001006079.1 zf-C2H2 174..196 CDD:395048 18/21 (86%)
C2H2 Zn finger 176..196 CDD:275368 17/19 (89%)
zf-H2C2_2 188..213 CDD:463886 22/24 (92%)
C2H2 Zn finger 204..224 CDD:275368 18/19 (95%)
zf-H2C2_2 216..239 CDD:463886 21/22 (95%)
C2H2 Zn finger 232..252 CDD:275368 17/19 (89%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.