DRSC/TRiP Functional Genomics Resources

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Protein Alignment MED21 and srb7

DIOPT Version :10

Sequence 1:NP_001015223.1 Gene:MED21 / 3354977 FlyBaseID:FBgn0040020 Length:142 Species:Drosophila melanogaster
Sequence 2:NP_596630.1 Gene:srb7 / 2540209 PomBaseID:SPBC1604.10 Length:138 Species:Schizosaccharomyces pombe


Alignment Length:128 Identity:38/128 - (29%)
Similarity:61/128 - (47%) Gaps:15/128 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MADRLTQLQDTVNQQAEHFCNAIGVIQQ----TSLPSKFVNFERIGPQTPIPCPPQE-DYAQ--L 58
            ||.|.||||||:::.|..|.::|..:..    ..||.:    |::......|...:| .:||  |
pombe     1 MACRCTQLQDTIDEVATQFYSSIHYLSSHHDFVPLPGQ----EKVSDSKVNPISAEELQFAQRDL 61

  Fly    59 FAQLIARCAKDIDTLIESLPNEDSSIELQNSSLKRLE---IENQGTARDLEEVVQKGELLLEK 118
            ...|:.:..: |||||..||...::.:.|...:|:|:   .|.|...:.||...:..:|.|.|
pombe    62 AKDLVTKFMQ-IDTLINQLPGISTAPKHQLEKIKKLQNSIEEKQLERKSLESENEDLKLQLAK 123

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MED21NP_001015223.1 Med21 3..128 CDD:463241 36/126 (29%)
srb7NP_596630.1 Med21 3..130 CDD:463241 36/126 (29%)

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