DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34393 and rasgef1a

DIOPT Version :9

Sequence 1:NP_001285578.1 Gene:CG34393 / 33534 FlyBaseID:FBgn0085422 Length:691 Species:Drosophila melanogaster
Sequence 2:XP_012822158.1 Gene:rasgef1a / 734010 XenbaseID:XB-GENE-5739365 Length:485 Species:Xenopus tropicalis


Alignment Length:557 Identity:136/557 - (24%)
Similarity:216/557 - (38%) Gaps:159/557 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   177 SVLGS--------------GGIMYINGRIVSGPLDSLIETLLPKDVVDLDKEFVFSFLLSCRLFL 227
            |:|||              |..:|.:|.:|||.|:.|||.|:|......||.::|:||||.|:|:
 Frog    19 SMLGSTCSGQVQPEMGEHCGDPVYQDGSLVSGSLEVLIERLVPTLDYYPDKTYIFTFLLSARIFI 83

  Fly   228 RPHELLGRL----------LDSVPESECLE------SLVSLLAEWTMKFPYDYRDERMMSHVKHI 276
            .|:|:|.::          |:|..|::..:      .::.||.|||..||:|::|||....:|.|
 Frog    84 HPYEILAKVGQMCIKQKQQLESGSEADKAKLKSFAAKIIQLLREWTETFPFDFQDERARKEMKEI 148

  Fly   277 VARCS-----NSHLEAAVSQTLSALLKRLT---DLERHEADLR--------ACQTNDKSGPETPL 325
            ..|.:     |..::.::||....:|..|:   ..:.....:|        ..:|..:|..:..|
 Frog   149 AQRITQCDEENGTIKKSISQMTQNVLVVLSTRGQFQEVREKIRQPVSDKGTILKTKPQSAQKDIL 213

  Fly   326 N-CPTATQYAQIVCRVEKKLAKHIGGEEFLQ-CSSMILLDKQKKWDQPSTSGAPPGAQDPKKTCN 388
            : |......||.:..:|.:...:|..|:.:| .|.|..||..|            ...|..||.|
 Frog   214 SVCSDPLILAQQLTTIELERLGNIFPEDLMQIISHMDSLDNHK------------CRSDVTKTYN 266

  Fly   389 LETYLDWSARLRLFVCNEILQSVGIEGRSRTVELWSGVAQYCLLVGNYNSATAILESLESPAIAR 453
            ||.|.:|...|.:.|..||.:.|..:.|:|.:|.:..||:.|..:||:||..||:..:....:||
 Frog   267 LEAYDNWFNCLSMLVATEICKVVKKKQRTRVMEFFIDVARECFNIGNFNSMMAIISGMNLSPVAR 331

  Fly   454 LKITWSKLQVTCQQLDCMQRHAEGHGHLWQKQAISLNEQQEGLKTDKQAPKEPAAQGAAPTQGAV 518
            ||.||||::..  :.|.::.|.:                                          
 Frog   332 LKKTWSKVKTA--KFDVLEHHMD------------------------------------------ 352

  Fly   519 AIAITTSSDSDEKPSTSGRVAGIAGISAATMESAPVPVASGSNVDAATAAAARTSTTAATTPLAS 583
                                                |.::..|.        ||:...||....|
 Frog   353 ------------------------------------PSSNFCNY--------RTALQGATQRSQS 373

  Fly   584 SGKPNDWVVIPVFADIVKLALGERENCLQRLANGHINMAAFDRMAAIVGAFTKHMQAMKAAQAPS 648
            :....:.:|||||...:|......:....||.|||||...|..::..:..|.    ..|..:.| 
 Frog   374 ANSSREKIVIPVFNLFIKDIFFLHKIHSNRLPNGHINFKKFWEISRQIHDFL----TWKQVECP- 433

  Fly   649 SGEYE---HFCRHMQQTTKLGEAELMMASFDCEEPNN 682
               ||   ....::..|....|..|.:|||:.|.|:|
 Frog   434 ---YEKDKKIQTYLLTTPIYTEEALFLASFENEGPDN 467

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34393NP_001285578.1 REM 196..300 CDD:100121 39/124 (31%)
RasGEF 334..>473 CDD:279011 45/139 (32%)
rasgef1aXP_012822158.1 REM 51..168 CDD:100121 36/116 (31%)
RasGEF 218..465 CDD:214539 79/354 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D246323at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23113
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.020

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