DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34393 and rasgrf2b

DIOPT Version :9

Sequence 1:NP_001285578.1 Gene:CG34393 / 33534 FlyBaseID:FBgn0085422 Length:691 Species:Drosophila melanogaster
Sequence 2:XP_009300046.1 Gene:rasgrf2b / 553520 ZFINID:ZDB-GENE-060504-1 Length:1275 Species:Danio rerio


Alignment Length:554 Identity:117/554 - (21%)
Similarity:181/554 - (32%) Gaps:171/554 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 YASKISAIACGTRCKQTVLQKSRGQRDRDKCHHGHHQHHRRHHRRRCR---------ISSNSSST 61
            |:.||..||. .:.|...|..:..|.:|.    |.|.:.:  ..|.||         |||.:||.
Zfish   710 YSLKIRKIAL-DQSKSLELFFATNQNNRS----GDHVNDK--SPRLCRKFSSPPPLSISSRTSSP 767

  Fly    62 DSESADECGLELGESGADSREAGAGGGAGLQVAQGGIFSLDPGHLTAETALLGGNIRYRRRHSAE 126
                            ..:|:.......|.:|   ||..|.....:|.::....|          
Zfish   768 ----------------VRTRKLSLNSPIGSKV---GILDLSTTSSSAASSPTSAN---------- 803

  Fly   127 QLSAYDLEMGFQQLELGTTISVGPKNE--------DLVQYDVPKNPHKRSQCDINFESSVLGSGG 183
                             .|||..|.|.        ||.:...|.:|.:              |.|
Zfish   804 -----------------PTISPPPSNNNNNSKPPLDLSRGQSPSSPEQ--------------SPG 837

  Fly   184 IMYINGRI-----VSGPLDSLIETLLPKDVVDLDKEFVFSFLLS-------CRLFLRPHELLGRL 236
            .:..|..:     :.|.|...|...: .:.|.|||....|...|       ||....|..|..|.
Zfish   838 ALDDNAEVPRIDALCGKLRRSIRRAV-LESVSLDKFIPESPQASEPGEISPCRSPSTPRHLRYRQ 901

  Fly   237 --LDSVPESECLESLVSLLA-----------------EWTMKFPYDYR---DERMMSHVKHIVAR 279
              :.:...|.|..|..|..|                 |.|....:..|   ..|:::.::|.|::
Zfish   902 SGVQTAENSRCSVSPASAFAIATAAAGHSSPPVFNNSERTCDKEFIIRRAATNRVLNVLRHWVSK 966

  Fly   280 CS-----NSHLEAAVSQTLSALLKRLTDLERHEAD-----LRACQTNDKSGPETPL-------NC 327
            .|     |..|:..|...|..:| |..||...|..     |.|...:|:...:..:       .|
Zfish   967 HSQDFEMNGELKMGVICLLEEVL-RDPDLLPQERKATANILSALSQDDQDDAQLKIEDILQMAEC 1030

  Fly   328 P--------TATQYAQIVCRVEKKLAKHIGGEEFLQCSSMILLDKQKKWDQPSTSGAPPGAQDPK 384
            |        :|.:.|:.:..::..:.:.|..||||          .:.|.:...:...|......
Zfish  1031 PKAECFESLSAMEIAEQITLLDHIVFRSIPYEEFL----------GQGWMKTDKTERTPYIMKTS 1085

  Fly   385 KTCNLETYLDWSARLRLFVCNEILQSVGIEGRSRTVELWSGVAQYCLLVGNYNSATAILESLESP 449
            :..|     |.|.    .|.::|:....:..|:.::|.|..||..|..:.|||....|..:|...
Zfish  1086 QHFN-----DMSN----LVASQIMSHTDVGSRAGSIEKWVAVADICRCLNNYNGVLEITSALNRS 1141

  Fly   450 AIARLKITWSKLQVTCQQ----LDCMQRHAEGHG 479
            ||.|||.||:|:   |:|    :|.:|:.....|
Zfish  1142 AIYRLKKTWAKV---CKQTKALMDKLQKTVSSEG 1172

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34393NP_001285578.1 REM 196..300 CDD:100121 30/137 (22%)
RasGEF 334..>473 CDD:279011 35/142 (25%)
rasgrf2bXP_009300046.1 PH_RasGRF1_2 19..154 CDD:270081
PH 24..129 CDD:278594
RhoGEF 243..424 CDD:279015
PH 476..584 CDD:214574
PH 476..583 CDD:278594
RasGEF_N 634..>682 CDD:279012
REM <938..1010 CDD:295342 18/72 (25%)
RasGEF 1036..1272 CDD:214539 38/159 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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