DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG34393 and rasgef1bb

DIOPT Version :10

Sequence 1:NP_608753.2 Gene:CG34393 / 33534 FlyBaseID:FBgn0085422 Length:691 Species:Drosophila melanogaster
Sequence 2:NP_001003479.1 Gene:rasgef1bb / 445085 ZFINID:ZDB-GENE-040801-220 Length:475 Species:Danio rerio


Alignment Length:540 Identity:143/540 - (26%)
Similarity:222/540 - (41%) Gaps:144/540 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   182 GGIMYINGRIVSGPLDSLIETLLPKDVVDL--DKEFVFSFLLSCRLFLRPHELLGRL-------- 236
            ||:.|.:.::|||.|::||:.|:|  .||.  |:.::|:||||.||||.|.||:.|:        
Zfish    31 GGLHYRDNKLVSGSLEALIQLLVP--TVDYYPDRSYIFTFLLSSRLFLNPFELMSRVCYLGVDHH 93

  Fly   237 ------LDSVPESECLESLVSLLAEWTMKFPYDYRDERMMSHVKHIVARCS--NSHLEAAVSQTL 293
                  :|.....:....:|.||.|||..||||:||||||..:|.:..|.:  :.....|:.:.:
Zfish    94 RVGDPQMDKKRIRDIAPKIVQLLTEWTETFPYDFRDERMMRSLKEMTHRLAFGDELSRRAMQRLI 158

  Fly   294 SALLKRLTDLERHEADLRACQTNDKSGPETP----------------LN-CPTATQYAQIVCRVE 341
            ..||::||.|.::|..|  ..|:..:..:.|                || |.....:||.:..:|
Zfish   159 QRLLRKLTTLGQYEESL--ATTSAAAAIDRPVALKSKQQLVRRDDCVLNLCDDPFIFAQQLTHIE 221

  Fly   342 KKLAKHIGGEEFLQCSSMILLDKQKKWDQPSTSGAPPGAQDPKKTCNLETYLDWSARLRLFVCNE 406
            .:...:||.|||::..:      ||:   ||.:  .......:|..|||.|::|..||......|
Zfish   222 MERLSYIGPEEFVRAFA------QKR---PSDN--HKSFFSKRKASNLEAYVEWFNRLSYLTATE 275

  Fly   407 ILQSVGIEGRSRTVELWSGVAQYCLLVGNYNSATAILESLESPAIARLKITWSKLQVTCQQLDCM 471
            |...|..:.|:|.:|.:..|||.|..:||:||..||:..:....::|||.||.|           
Zfish   276 ICMPVKKKHRARVLEFFIDVAQECFNIGNFNSLMAIITGMNMNPVSRLKKTWGK----------- 329

  Fly   472 QRHAEGHGHLWQKQAISLNEQQEGLKTDKQAPKEPAAQGAAPTQGAVAIAITTSSDSDEKPSTSG 536
                                    :.|||                                    
Zfish   330 ------------------------VNTDK------------------------------------ 334

  Fly   537 RVAGIAGISAATMESAPVPVASGSNVDAATAAAARTSTTAATTPLASSGKPNDWVVIPVFADIVK 601
                 ..|....|:    |.::..:...|...|.:.|:||.|:        .:.:|||.|:..:|
Zfish   335 -----FDILVHQMD----PSSNFYSYRTALRGATQRSSTAHTS--------QEMIVIPFFSLFIK 382

  Fly   602 LALGERENCLQRLANGHINMAAFDRMAAIVGAFTKHMQAMKAAQAPSSGEYEHFCRHMQQTTKLG 666
            ......|.|..||:|||||...|..:|..|..|....|.:    .|...:.:.. :::.......
Zfish   383 DIYFLNEGCANRLSNGHINFEKFWELAKQVSEFLSWRQVI----CPFERDRKTL-QYLISAPVFS 442

  Fly   667 EAELMMASFDCEEP-NNAEK 685
            |.||.:||::.|.| ||.|:
Zfish   443 EDELQLASYESEGPENNLER 462

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34393NP_608753.2 REM 196..300 CDD:100121 43/121 (36%)
RasGEF 334..>473 CDD:459872 42/138 (30%)
rasgef1bbNP_001003479.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..25
REM 44..168 CDD:100121 45/125 (36%)
RasGEF 213..406 CDD:459872 68/291 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 452..475 5/11 (45%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.