DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG34393 and Rapgef5

DIOPT Version :9

Sequence 1:NP_001285578.1 Gene:CG34393 / 33534 FlyBaseID:FBgn0085422 Length:691 Species:Drosophila melanogaster
Sequence 2:NP_001360918.1 Gene:Rapgef5 / 217944 MGIID:2444365 Length:879 Species:Mus musculus


Alignment Length:620 Identity:111/620 - (17%)
Similarity:179/620 - (28%) Gaps:231/620 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 QRDRDKCHHGHHQHHRRHHRRR------------------CRISSNSSSTDSESADE-------- 68
            |...|:|.:.:.:..|....::                  |.:|...:....||:||        
Mouse   180 QFSSDECSYLYCEFEREEEWQKGVKLLLELVHLIPARAGICDLSHQKTEDSEESSDEILARLTSA 244

  Fly    69 ---------------CGLELGESGADSREAGAGGGAGLQVAQGGIFSL----DPGHLTAETALLG 114
                           ..:|..:..||..........|.....|.:..|    |.|.:.....|..
Mouse   245 VQRELAAVIALKARKSAIEQDDENADKHVTVTEANNGPDPQAGVMCKLQERDDIGRIELVHKLAR 309

  Fly   115 GNIRY--RRRHSAEQLSAYDLEMGFQQL-ELGTTI-------SVGPKNEDLVQYDVPKNPHKRSQ 169
            .|.::  ..:..:|:|...|.|:...|: |.|.::       |.||.                  
Mouse   310 ENCQFLQTEKKESEKLEQQDDEVTMVQVKEQGQSVLVLKKVASCGPA------------------ 356

  Fly   170 CDINFESSVLGSGGIMYINGRIVSGPLDSLIETLL---------PKDVVDLDKEFVFSFLL---- 221
                 .:|........|:   :|||..:.::|.||         .|:...|..:|:.::.:    
Mouse   357 -----PTSGSAENDARYV---VVSGTPEKILEHLLNDLHLAEVQHKETETLLDDFLLTYTVFMTT 413

  Fly   222 --SCRLFLRP-------------------------------------HE----------LLGRLL 237
              .|:..||.                                     ||          :...:|
Mouse   414 DDLCQALLRHYSAKKYQGEEENSDVPCRKRKVLHLVSQWISLYKDWLHEDEHSKMFLKTIYRNVL 478

  Fly   238 DSVPESECLESLV-------------------------------SLLAEWTMKFPYDYRDERMMS 271
            |.|.|...||..:                               ||...|..........|.:..
Mouse   479 DDVYEYPILEKELKEFQKILGVYRRHTVDEYSPQKKNKALFHQFSLKENWLQHRGTVAETEEIFC 543

  Fly   272 HVKHIVARCSNSHLEAAVSQTLSALLKRLTD-LERHEADL-----------RACQTNDKSGPETP 324
            ||  .:...|...::|.||.|...:||.:.: |:|.|.||           ...|.||       
Mouse   544 HV--YITEHSYISVKAKVSSTAQEILKVVAEKLQRAEEDLALVAITFSGEKHEFQPND------- 599

  Fly   325 LNCPTATQYAQIVCRVEKKLAKHIG----GEEFLQCSSMILLDKQKKWDQP-------------- 371
            |....:.:.:..:....|.||..:.    .||..|.|..||  ....||..              
Mouse   600 LAISKSLEASGRIYVYRKDLADTLNPLAENEESQQRSMRIL--GMNTWDLALELMSFDWSLFNSI 662

  Fly   372 ----------STSGAPPGAQDPKKTCNLETYLDWSARLRLFVCNEILQSVGIEGRSRTVELWSGV 426
                      |..|      :.:.|.||...|.....::|:|..|||....:..|.:.|:.:..:
Mouse   663 HEQELIYFTFSRQG------NGENTVNLSLLLQRCNEVQLWVATEILLCSQLGKRVQLVKKFIKI 721

  Fly   427 AQYCLLVGNYNSATAILESLESPAIARLKITWSKL 461
            |.:|....|.||..||:..|.:.:::||..||.|:
Mouse   722 AAHCKAQQNLNSFFAIVMGLNTASVSRLSQTWEKI 756

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34393NP_001285578.1 REM 196..300 CDD:100121 30/196 (15%)
RasGEF 334..>473 CDD:279011 37/156 (24%)
Rapgef5NP_001360918.1 DEP_Epac 98..221 CDD:239884 4/40 (10%)
RasGEFN 367..498 CDD:214571 21/133 (16%)
RasGEF 639..878 CDD:214539 30/126 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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