DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mad and Smad9

DIOPT Version :10

Sequence 1:NP_001259992.1 Gene:Mad / 33529 FlyBaseID:FBgn0011648 Length:525 Species:Drosophila melanogaster
Sequence 2:XP_036019060.1 Gene:Smad9 / 55994 MGIID:1859993 Length:456 Species:Mus musculus


Alignment Length:409 Identity:73/409 - (17%)
Similarity:126/409 - (30%) Gaps:158/409 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   194 VDELTVK------RPHSDEPHYHSGDEDDELLADDGYDGEPNQTPAEHADQQQYVCEVCSKSFKI 252
            ::|..:|      |..:..|...:.|||:::                |.::.:  .|..:..|.:
Mouse  1131 INEWLIKKLRLFFRKFTSSPVMETVDEDEDV----------------HTERLR--VESGAAEFDL 1177

  Fly   253 RHHLLVHRHTHVDSHAPTADMLHERA----DFNGATP--------GAGGAGGKPSYS------CP 299
               :.:||.|      .|..::|::.    :.:...|        |..|||....:.      .|
Mouse  1178 ---VQLHRLT------KTYQLIHKKIIAVNNISLGIPAGECFGLLGVNGAGKTTIFKMLTGDIIP 1233

  Fly   300 KCPKAFV-NKGNLLNHLETHTHEKSYAC-------DICT----------------KTFKYNVQ-- 338
            ......: ||...|.|:::|:....| |       |:.|                |..|..|.  
Mouse  1234 SSGNILIRNKSGSLGHVDSHSSLVGY-CPQEDALDDLVTVEEHLYFYARVHGIPEKDIKETVHKL 1297

  Fly   339 -LRLHMRIHTGERPHKCEICNRGFSQ--------------------LSNLRSHRKTH-----SKV 377
             .|||:..:   :.....:|:.|..:                    .|.:....|.|     |:.
Mouse  1298 LRRLHLMAY---KDRSTSMCSYGTKRKLSTALALIGKPSILLLDEPSSGMDPKSKRHLWRIISEE 1359

  Fly   378 KPYKCHLCLKSFTM--LDNLTAHSAKCLKDKFRCTLCSKSFAKEGNLLSHLQSHSDGIVEKMFKC 440
            ...||.:.|.|.:|  .:.|....|..:..:|:|.          ..|.|::|...         
Mouse  1360 VQNKCSVILTSHSMEECEALCTRLAIMVNGRFQCI----------GSLQHIKSRFG--------- 1405

  Fly   441 EMCPKSFKNKEDWKRHVRVHTGEKPYTCDICSKGFAQKANLLSHRKTHLKPNVTYSCDRCARTFR 505
                :.|.        |:||......:.:..:| |.|    |...||:||.             :
Mouse  1406 ----RGFT--------VKVHLKNNKVSMENLTK-FMQ----LHFPKTYLKD-------------Q 1440

  Fly   506 SQKVLQMHVPKCTGGAGPI 524
            ...:|:.|||...||...|
Mouse  1441 HLSMLEYHVPVTAGGVANI 1459

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MadNP_001259992.1 MH1_SMAD_1_5_9 93..216 CDD:199814 6/27 (22%)
MH2_SMAD_1_5_9 325..525 CDD:199822 46/253 (18%)
Smad9XP_036019060.1 MH1_SMAD_1_5_9 41..162 CDD:199814
MH2 256..456 CDD:469593
Blue background indicates that the domain is not in the aligned region.

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