DRSC/TRiP Functional Genomics Resources

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Protein Alignment okr and chd7

DIOPT Version :10

Sequence 1:NP_476661.1 Gene:okr / 33507 FlyBaseID:FBgn0002989 Length:784 Species:Drosophila melanogaster
Sequence 2:XP_697956.4 Gene:chd7 / 569471 ZFINID:ZDB-GENE-070912-179 Length:3140 Species:Danio rerio


Alignment Length:687 Identity:187/687 - (27%)
Similarity:304/687 - (44%) Gaps:129/687 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   153 SNILRPHQREGVRFM----YECVEGKRGNFNGCIMADEMGLGKTLQCVTLVWTLLRQGPECKPTI 213
            :|.||.:|.|||.::    |        |...||:|||||||||:|.:|.::.:..:|..     
Zfish  1009 ANALREYQLEGVNWLLFNWY--------NTRNCILADEMGLGKTIQSITFLYEIYLKGIH----- 1060

  Fly   214 NKAIVVSPSSLVKNWEKEFTKW-------LHGRLLCLPMEGGTKENTIRALEQFSM-TSARLGTP 270
            ...:|::|.|.:.|||:||..|       .||        ......||:|.|.:.. |..|    
Zfish  1061 GPFLVIAPLSTIPNWEREFRTWTELNVVVYHG--------SQASRKTIQAYEMYYRDTQGR---- 1113

  Fly   271 VLLISYETFRIYAEILCKYEVGM-------------VICDEGHRLKNSDNLTYQALMGLKTKRRV 322
               |....::.:| ::..:|:.:             ||.||.|||||.:....:.|..:..:.:|
Zfish  1114 ---IIKGAYKFHA-VITTFEMILTDCPELRNVPWRCVIIDEAHRLKNRNCKLLEGLKMMDMEHKV 1174

  Fly   323 LLSGTPIQNDLTEYYSLVNFVNPEMLGTAAVFKRNFESAILRGQNTDSTEQERQRAIEKTQELIG 387
            ||:|||:||.:.|.:||:||:.|:...:.:.|.:.|...        .||       |:.|:|.|
Zfish  1175 LLTGTPLQNTVEELFSLLNFLEPDRFPSESTFMQEFGDL--------KTE-------EQVQKLQG 1224

  Fly   388 LVDQCIIRRTNQILTKYLPVKFEMVICAKLTAIQLELYTNFLKSDQVRRSLADC----------N 442
            ::...::||..:.:.|.|..|.|.:|..:||.:|.:.|...|:.:....|.:..          |
Zfish  1225 ILKPMMLRRLKEDVEKNLAPKEETIIEVELTNVQKKYYRAILEKNFAFLSKSGAGGGSGGGGGSN 1289

  Fly   443 EKASLTALADITTLKKICSHPDLIYEKLTAREKGFENSQNVLPSNYKPKDLNP--ELSGKFMLLD 505
            ....|..:.:   |:|.|:||.||.   .|.||..|..:...|.:.....|..  :.:||.:|:|
Zfish  1290 VPNLLNTMME---LRKCCNHPYLIN---GAEEKIMEEFRETHPLDQPEFHLQAMIQAAGKLVLID 1348

  Fly   506 FMLAAIRAEGNDKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDSF 570
            .:|..::| |..:|::.|...:.||:.|....:|:|.:.|:||.:....|...:|||:.|:||.|
Zfish  1349 KLLPKLKA-GGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSRPDSDRF 1412

  Fly   571 LFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKIL 635
            :|:|.::|||.|:||..|:...:||.||||.||.||.||..|.||.|...||||:...|.|.::.
Zfish  1413 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMF 1477

  Fly   636 QRQTHKKSLSSTII------DNNESAEKHFTRDDLKDLFTFDA-NILSDTHDKLKCKRCVQNIQ- 692
            .:.:.|..|...::      :|..:..:..::.:::||....| ..|.:..|: ..|.|.::|. 
Zfish  1478 DKASLKLGLDKAVLQSMSGRENAANGVQQLSKKEIEDLLRKGAYGALMEEEDE-GSKFCEEDIDQ 1541

  Fly   693 --------MKPPPEDTDCTSHLSQWYHCSNNR--GLPDNILAQAW------------------MD 729
                    :....|....|...:.:....|..  .|.|....|.|                  :|
Zfish  1542 ILQRRTQTITIESEGKGSTFAKASFVSAGNRTDISLEDPDFWQKWAKKAELDLDAINGRNNLVID 1606

  Fly   730 CKCVSFVFHHRSQAQE----IVPSAEEEATDQPEEKP 762
            ...|.....|.|..:|    .....|.::.|:|.:||
Zfish  1607 TPRVRKQTRHYSSMKEDDLMEYSELESDSEDKPIQKP 1643

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
okrNP_476661.1 Rad54_N <76..>126 CDD:430137
HepA <156..650 CDD:440319 160/536 (30%)
DEXHc_RAD54A 156..396 CDD:350825 74/264 (28%)
chd7XP_697956.4 Med15 <30..>317 CDD:312941
PAT1 <258..>399 CDD:401645
Atrophin-1 362..>608 CDD:460830
CD1_tandem_CHD5-9_like 840..905 CDD:349315
CD2_tandem_CHD5-9_like 923..980 CDD:349310
PLN03142 1012..>1618 CDD:215601 179/657 (27%)
BRK 2741..2784 CDD:462196
Blue background indicates that the domain is not in the aligned region.

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