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Protein Alignment okr and chd3

DIOPT Version :10

Sequence 1:	NP_476661.1	Gene:	okr / 33507	FlyBaseID:	FBgn0002989	Length:	784	Species:	Drosophila melanogaster
Sequence 2:	XP_009301392.1	Gene:	chd3 / 568230	ZFINID:	ZDB-GENE-121031-4	Length:	2101	Species:	Danio rerio

Alignment Length:	760	Identity:	200/760 - (26%)
Similarity:	320/760 - (42%)	Gaps:	159/760 - (20%)

- Green bases have known domain annotations that are detailed below.

  Fly   125 HPPAYTEHER--MGMDPTK------------VLVHVVVDPLL------------SNILRPHQREG 163
            |..||..|..  |..||.|            .....|.||.:            ...|..:|.||
Zfish   690 HKTAYWRHREAVMKEDPEKPRKMRRREENDEAPSTPVNDPTIKYEEQPEFVTETGGTLHLYQLEG 754

  Fly   164 VRFM-YECVEGKRGNFNGCIMADEMGLGKTLQCVTLVWTLLRQGPECKPTINKAIVVSPSSLVKN 227
            :.:: :...:|     ...|:|||||||||:|.:..:::|.::|    .|....:|.:|.|.:.|
Zfish   755 LNWLRFSWAQG-----TDTILADEMGLGKTIQTIVFLYSLFKEG----HTKGPFLVSAPLSTIIN 810

  Fly   228 WEKEFTKWL------------HGRLLC---------LPMEGGTKENTIRALEQFSMTSARLGTPV 271
            ||:||..|.            ..|.:.         ..::||.|...:|       ..|.:...|
Zfish   811 WEREFEMWAPDFYVVTYTGDKDSRAIIRENEFTFDDTAVKGGKKAFKLR-------REAPIKFHV 868

  Fly   272 LLISYETFRIYAEILCKYEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEY 336
            ||.|||...|...:|...:...::.||.|||||:.:..::.|...|...::||:|||:||:|.|.
Zfish   869 LLTSYELVTIDQNVLKSIDWACLVVDEAHRLKNNQSKFFRRLNDYKIDHKLLLTGTPLQNNLEEL 933

  Fly   337 YSLVNFVNPEMLGTAAVFKRNFESAILRGQNTDSTEQERQRAIEKTQELIGLVDQCIIRRTNQIL 401
            :.|:||:.|........|...|         .|.:::::   |:|..:|:|   ..::||....:
Zfish   934 FHLLNFLTPNRFNNLEGFLEEF---------ADISKEDQ---IKKLHDLLG---PHMLRRLKADV 983

  Fly   402 TKYLPVKFEMVICAKLTAIQLELYTNFL-KSDQVRRSLADCNEKASLTALADITTLKKICSHPDL 465
            .|.:|.|.|:::..:|:.:|.:.|...| ::.:...|....|:.:.|..:.|   |||.|:||.|
Zfish   984 FKNMPAKTELIVRVELSPMQKKYYKFILTRNFEALNSKGGGNQVSLLNIMMD---LKKCCNHPYL 1045

  Fly   466 IYEKLTAREKGFENSQNVLPSN-YKPKDLNPELSGKFMLLDFMLAAIRAEGNDKVVLISNYTQTL 529
            .........|        .||. |:...|. :.|||.|||..||..::.:|: :|::.|..|:.|
Zfish  1046 FPVAAAEAPK--------TPSGAYEGVGLT-KASGKLMLLQKMLRKLKEQGH-RVLVFSQMTKML 1100

  Fly   530 DLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLIGANRLFMF 594
            ||.|.......|.:.|:||.::...|.:.:||||.|.:..|.|:||::|||.|:||..|:.:.:|
Zfish  1101 DLLEDFLDSEGYKYERIDGGITGALRQEAIDRFNAPGAVQFCFLLSTRAGGLGINLATADTVIIF 1165

  Fly   595 DPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTII-DNNESAEKH 658
            |.||||.||.||.:|..|.||.....|||.|...|:||:|.|....|..|:..:: ....|....
Zfish  1166 DSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGS 1230

  Fly   659 FTRDDLKDLFTF------------------DANILSDTHDKLKCKRCVQNIQMKPPPEDTD---C 702
            .::.:|.|:..|                  |.:::.  :|....:|.:...|  ...:|:|   .
Zfish  1231 MSKQELDDILKFGTEELFKDEIEAGDNKDDDMSVIH--YDNAAIERLLDRSQ--DATDDSDMQNM 1291

  Fly   703 TSHLSQW----YHCSNNRGL----------PDNILAQAWMDCKCVSFVFHHRSQAQEIV------ 747
            ..:||.:    |....:..:          .:|:....|     ...:.||..|.||.:
Zfish  1292 NEYLSSFKVAQYTVKEDDKIEEIEREIIKQEENVDPDYW-----EKLLRHHYEQQQEDLARNLGK 1351

  Fly   748 -----------PSAEEEATDQPEEKPESRKRSSTPASDDSADEDF 781
                       .:|:|   ||......|..:|......:..||||
Zfish  1352 GKRVRKQVNYNDAAQE---DQEWHADISDNQSEYSVGSEEEDEDF 1393

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.