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Protein Alignment okr and chd4a

DIOPT Version :10

Sequence 1:	NP_476661.1	Gene:	okr / 33507	FlyBaseID:	FBgn0002989	Length:	784	Species:	Drosophila melanogaster
Sequence 2:	XP_021323760.1	Gene:	chd4a / 558344	ZFINID:	ZDB-GENE-041111-187	Length:	1931	Species:	Danio rerio

Alignment Length:	906	Identity:	223/906 - (24%)
Similarity:	359/906 - (39%)	Gaps:	211/906 - (23%)

- Green bases have known domain annotations that are detailed below.

  Fly     3 RSLAPSQRG--------------PLRPESRHSFTP-------PLLKKNKRS------------CQ 34
            |...||.:|              |..|..|.|..|       ||..:.:|.            |.
Zfish   474 RCTCPSMKGKVQKILTWRWTEPPPPTPVPRPSDLPTDAPDPTPLAGRPEREFFVKWQNMSYWHCS 538

  Fly    35 QELEREQELDRRRLGALRDASNTSELPLPIRFTANSEYELAIAKVLARKFKVP----MDNYVPDY 95
            ...|.:.|:..:.:.......|..:.|.||.|....|.|    |...||.|.|    |:.....:
Zfish   539 WVTELQLEIHCQVMFRNYQRKNDMDEPPPIDFGGEGEEE----KSDKRKKKDPTYARMEEKYYRF 599

  Fly    96 GGKRVLGVRRCISRRPLHDPMACNALVLFHPPAYTE----------------------HERM--- 135
            |.|....|...|....:.....|:.|:.:....|.:                      |..:
Zfish   600 GIKMEWMVIHRILNHSVDKKNNCHYLIKWRDLTYDQATWELEDMDLPDYDTYKLQYWNHRELMMG 664

  Fly   136 --GMDPTKVLV------------HVVVDPLL------------SNILRPHQREGVRFM-YECVEG 173
              |....|:.:            :.||||.:            ...|.|:|.||:.:: :...:|
Zfish   665 DEGKPGKKIKIKGKMRKLDRPPENPVVDPTIKFERQPDYLDTTGGTLHPYQLEGLNWLRFSWAQG 729

  Fly   174 KRGNFNGCIMADEMGLGKTLQCVTLVWTLLRQGPECKPTINKAIVVSPSSLVKNWEKEFTKWL-- 236
                 ...|:|||||||||:|....:::|.::|....|    .:|.:|.|.:.|||:||..|.
Zfish   730 -----TDTILADEMGLGKTVQTAVFLYSLYKEGHSKGP----FLVSAPLSTIINWEREFEMWAPD 785

  Fly   237 ----------HGRLLCLPMEGGTKENTIRALEQFS--MTSARLGTPVLLISYETFRIYAEILCKY 289
                      ..|.:....|...:.|.||..::.|  ...|.:...|||.|||...|...:|...
Zfish   786 MYVVTYVGDKDSRAVIRENEFSFENNAIRGGKKPSKMKKEASVKFHVLLTSYELITIDTAVLGSI 850

  Fly   290 EVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTAAVF 354
            :...::.||.|||||:.:..::.|.....:.::||:|||:||:|.|.:.|:||:.||.......|
Zfish   851 DWACLVVDEAHRLKNNQSKFFRILNNYPLQHKLLLTGTPLQNNLEELFHLLNFLTPERFSNLEGF 915

  Fly   355 KRNFESAILRGQNTDSTEQERQRAIEKTQELIGLVDQCIIRRTNQILTKYLPVKFEMVICAKLTA 419
            ...|         .|..::::   |:|..:::|   ..::||....:.|::|.|.|:::..:|:.
Zfish   916 LEEF---------ADIAKEDQ---IKKLHDMLG---PHMLRRLKADVFKHMPSKTELIVRVELSP 965

  Fly   420 IQLELYTNFL-KSDQVRRSLADCNEKASLTALADITTLKKICSHPDLIYEKLTAREKGFENSQNV 483
            :|.:.|...| ::.:...:....|:.:.|..:.|   |||.|:||.|.........|
Zfish   966 MQKKYYKFILTRNFEALNTRGGGNQVSLLNVVMD---LKKCCNHPYLFPAAAMEAAK-------- 1019

  Fly   484 LPSN-YKPKDLNPELSGKFMLLDFMLAAIRAEGNDKVVLISNYTQTLDLFEQLARKRKYGFVRLD 547
            :|:. |:...|. :.|||.:||..||..:: ||..:|::.|..|:.|||.|.......|.:.|:|
Zfish  1020 MPNGMYEGGGLT-KSSGKLLLLQKMLRKLK-EGGHRVLIFSQMTKMLDLLEDFLENEGYKYERID 1082

  Fly   548 GTMSIKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWR 612
            |.::...|.:.:||||.|.:..|:|:||::|||.|:||..|:.:.::|.||||.||.||.:|..|
Zfish  1083 GGITGGMRQEAIDRFNAPGAPQFVFLLSTRAGGLGINLATADTVVIYDSDWNPHNDIQAFSRAHR 1147

  Fly   613 DGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTII-DNNESAEKHFTRDDLKDLFTFDANILS 676
            .||.|...|||.|...|:||:|.|....|..|:..:: ....|.....::.:|.|:..|....|
Zfish  1148 IGQNKKVMIYRFVTKASVEERITQVAKKKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGTEEL- 1211

  Fly   677 DTHDKLKCKRCVQNIQMKPPPEDTDCTSHLSQWYHCSNNRGLPDNILAQAWMDCKCVSFVFHHRS 741
                            .|...|.             .|..|..|             |.|.|:..
Zfish  1212 ----------------FKDEGEG-------------ENKEGQED-------------SSVIHYDD 1234

  Fly   742 QAQEIVPSAEEEATD---------------------QPEEKPESRKRSSTPASDDSADEDF 781
            :|.:.:....::|||                     :.||:.|...:......::|.|.|:
Zfish  1235 KAIDRLLDRNQDATDDTELQSMNEYLSSFKVAQYVVKDEEEAEEEVQREIIKQEESVDPDY 1295

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.