DRSC/TRiP Functional Genomics Resources

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Protein Alignment okr and SMARCAL1

DIOPT Version :10

Sequence 1:NP_476661.1 Gene:okr / 33507 FlyBaseID:FBgn0002989 Length:784 Species:Drosophila melanogaster
Sequence 2:NP_054859.2 Gene:SMARCAL1 / 50485 HGNCID:11102 Length:954 Species:Homo sapiens


Alignment Length:647 Identity:151/647 - (23%)
Similarity:250/647 - (38%) Gaps:147/647 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 FTANSEYE---LAIAK--------VLARKFKVPMDNYVPDYGGKRVLGVRRCISRRPLHDPMACN 119
            |.|:..|.   :|:.|        |..||:...::.:      .:::...||:.:..| ||:...
Human   343 FEADISYSQDLIALFKQMDSRRYDVKTRKWSFLLEEH------SKLIAKVRCLPQVQL-DPLPTT 400

  Fly   120 ALVLFHPPAYTEHERMGMDPTKVLVHV-VVDPLLSNILRPHQREGVRFMYECVEGKRGNFNGCIM 183
            ..:.|  .:..:...:.:.|......: .|||.|.:.|.|.||.||.|  ...:|.|     .::
Human   401 LTLAF--ASQLKKTSLSLTPDVPEADLSEVDPKLVSNLMPFQRAGVNF--AIAKGGR-----LLL 456

  Fly   184 ADEMGLGKTLQCVTLV------WTLLRQGPECKPTINKAIVVSPSSLVKNWEKEFTKWLHGRLL- 241
            ||:||||||:|.:.:.      |.||              ||.|||:...||:.|.:||..... 
Human   457 ADDMGLGKTIQAICIAAFYRKEWPLL--------------VVVPSSVRFTWEQAFLRWLPSLSPD 507

  Fly   242 CLPMEGGTKEN------TIRALEQFSMTSARLGTPVLLISYETFRIYAEILCKYEVGMVICDEGH 300
            |:.:....|:.      .|.:.:..|....:|.||        |::            ||.||.|
Human   508 CINVVVTGKDRLTAGLINIVSFDLLSKLEKQLKTP--------FKV------------VIIDESH 552

  Fly   301 RLKNSDNLTYQALMG-LK-TKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTAAVFKRNFESAIL 363
            .||||.....:|.|. || .||.:||||||..:...|.|:.:..|.|........|...:..|..
Human   553 FLKNSRTARCRAAMPVLKVAKRVILLSGTPAMSRPAELYTQIIAVKPTFFPQFHAFGLRYCDAKR 617

  Fly   364 RGQNTDSTEQERQRAIEKTQELIGLVDQCI-IRRTNQILTKYLPVKFEMVICAKLTAIQLELYTN 427
            .....|.:      ......||..|:::.: :||....:...||.|...::.             
Human   618 MPWGWDYS------GSSNLGELKLLLEEAVMLRRLKSDVLSQLPAKQRKIVV------------- 663

  Fly   428 FLKSDQVRRSLADCNEKASLTALA-DITTLKKICSHPD---LIYEKLTAREKGFENSQNVLPSNY 488
                  :.....:...:|:|.|.| ::||..|......   :::...||..|        :||  
Human   664 ------IAPGRINARTRAALDAAAKEMTTKDKTKQQQKDALILFFNRTAEAK--------IPS-- 712

  Fly   489 KPKDLNPELSGKFMLLDFMLAAIRAEGNDKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIK 553
                          :::::|..:.: |.:|.::.:::...||...|...::....:|:||:.|..
Human   713 --------------VIEYILDLLES-GREKFLVFAHHKVVLDAITQELERKHVQHIRIDGSTSSA 762

  Fly   554 KRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKP 618
            :|..:..:|...|..: :.:||..|...||....|:.:...:..|||....||..||.|.||...
Human   763 EREDLCQQFQLSERHA-VAVLSITAANMGLTFSSADLVVFAELFWNPGVLIQAEDRVHRIGQTSS 826

  Fly   619 CYIYRLVASGS--------IEEKILQRQTHKKSLSSTIIDNNESAEKHFTRD----DLKDLF 668
            ..|:.|||.|:        |:|||  :...:..||.|.......:..:..:|    .:.|||
Human   827 VGIHYLVAKGTADDYLWPLIQEKI--KVLAEAGLSETNFSEMTESTDYLYKDPKQQKIYDLF 886

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
okrNP_476661.1 Rad54_N <76..>126 CDD:430137 10/57 (18%)
HepA <156..650 CDD:440319 128/521 (25%)
DEXHc_RAD54A 156..396 CDD:350825 70/255 (27%)
SMARCAL1NP_054859.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..20
Mediates interaction with RPA2. /evidence=ECO:0000269|PubMed:24910198 5..30
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 27..238
HARP 248..302 CDD:462166
HARP 343..397 CDD:462166 12/60 (20%)
HepA <423..856 CDD:440319 129/526 (25%)
DEXHc_HARP_SMARCAL1 436..645 CDD:350768 70/255 (27%)
DESH box 549..552 2/2 (100%)
Nuclear localization signal. /evidence=ECO:0000269|PubMed:18805831 644..661 5/16 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 904..934
Blue background indicates that the domain is not in the aligned region.

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