DRSC/TRiP Functional Genomics Resources

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Protein Alignment okr and Ercc6l2

DIOPT Version :10

Sequence 1:NP_476661.1 Gene:okr / 33507 FlyBaseID:FBgn0002989 Length:784 Species:Drosophila melanogaster
Sequence 2:XP_038952187.1 Gene:Ercc6l2 / 361197 RGDID:1561537 Length:1561 Species:Rattus norvegicus


Alignment Length:754 Identity:197/754 - (26%)
Similarity:334/754 - (44%) Gaps:164/754 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   152 LSNILRPHQREGVRFMY-ECVEGKRGNFNGCIMADEMGLGKTLQCVTLVWTLL-RQG-------- 206
            ::..||.:||||.:|:| ..::|:     |||:.|:||||||:|.::.:..:| ::|        
  Rat   118 INRYLRDYQREGAQFLYRHYIKGR-----GCILGDDMGLGKTIQVISFLAAVLHKKGTREDIENN 177

  Fly   207 ----------PECKPTINKA-IVVSPSSLVKNWEKEFTKWLHGRLLCLPMEGGTKENTIRALEQF 260
                      .|...|..|. ::|:|.|::.||:.|...|.:.|:..|  .|..|:|.:..|:|.
  Rat   178 MPEFLLKSMKKESSSTARKMFLIVAPLSVLYNWKDELDTWGYFRVTVL--HGSKKDNELTRLKQR 240

  Fly   261 SMTSARLGTPVLLISYETFRIYAEILCKYEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLS 325
            .       ..:.|.:|||.|:..|.|...|...:|.||.||::|.:....:.:..:|.|.|:.|:
  Rat   241 K-------CEIALTTYETLRLCLEELNSLEWSAIIVDEAHRIRNPNARVTEVMKAVKCKVRIGLT 298

  Fly   326 GTPIQNDLTEYYSLVNFVNPEMLGTAAVFKRNFESAILRGQNTDSTEQERQRAIEKTQELIGLVD 390
            ||.:||::.|.:.::::..|.:||:...||:.|...:..||...:|::|.....:....|...:.
  Rat   299 GTILQNNMKELWCVMDWAVPGLLGSRIHFKKQFSDPVEHGQRHTATKRELATGRKAMHRLAKKMS 363

  Fly   391 QCIIRRTNQILTKYLPVKFEMVICAKLTAIQLELYTNFLKSDQVRRSLAD--------------C 441
            ...:|||..::...||.|.:.::.:.||..|..:|...|:::.|...|..              |
  Rat   364 GYFLRRTKTLIKGQLPKKEDRMVYSSLTDFQKAVYQTVLETEDVALILTSSQPCTCGSGQKRRKC 428

  Fly   442 NEKAS-------LTALADITTLKKICSHPDLIYEKLTAR----------EKGFENSQNVLPSNYK 489
            ..|.:       ...|:.:|.|:|:.:|..|:....|::          ::.|....:.:   .|
  Rat   429 CYKTNSQGDTVRTLCLSYLTVLQKVANHVALLQAASTSKHQETLIKRICDQVFSRFPDFV---QK 490

  Fly   490 PKDL------NPELSGKFMLLDFMLAAIRAEGNDKVVLISNYTQTLDLFEQLARKRKYGFVRLDG 548
            .||.      :|:.|||..:||.:|...| :..|||:|.|..|:.||:.:|........:.||||
  Rat   491 SKDAAFETLSDPKYSGKMKVLDQLLNHFR-KHRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDG 554

  Fly   549 TMSIKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRD 613
            :...::|.|:|..||..: |..:.::|:.|||.|||.||||.:.:|||.||||||.||:.|.:|.
  Rat   555 STKSEERLKIVKEFNSSQ-DVNICLVSTMAGGLGLNFIGANVVILFDPTWNPANDLQAIDRAYRI 618

  Fly   614 GQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIIDNNESAEKHF------------------- 659
            ||.:...::||::.|::||.:..||.:|:.|...:: .:|:|:::|                   
  Rat   619 GQCRDVKVFRLISLGTVEEIMYLRQVYKQQLHCVVV-GSENAKRYFEAVQGSKEHRGELFGVHNL 682

  Fly   660 ----------TRDDLK-------------DLFTF---------------DANILSDTHDKLKCKR 686
                      |||.|:             ..:.|               :|.|::.| ..||.:.
  Rat   683 FKLRSQGSCLTRDILETRSQPGELQIISLGFWDFVVKCFIVLHLREGQVEAGIMTAT-TWLKGEA 746

  Fly   687 CVQNIQMKPPPEDTDCTSHLSQWYHCSNNRGLPDNI--LAQAWMDCKCVSFVFHHRSQAQEIVPS 749
            ..|.::   .|.|.||..              |.|:  |.....|.:.|.....|:.......|.
  Rat   747 SAQKLE---TPRDPDCQE--------------PTNVCELYSDMSDEESVGKAVKHKVSGPSRTPG 794

  Fly   750 AEEEAT-------DQPEEKPES-RKRSSTP-ASDDSADE 779
            :..:.|       ...|.|.|| :.....| :||.|:||
  Rat   795 SSAQLTLLQCGFSKLFEAKCESVQDGDGNPVSSDGSSDE 833

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
okrNP_476661.1 Rad54_N <76..>126 CDD:430137
HepA <156..650 CDD:440319 161/551 (29%)
DEXHc_RAD54A 156..396 CDD:350825 73/260 (28%)
Ercc6l2XP_038952187.1 Tudor_SF 17..72 CDD:470623
HepA <47..649 CDD:440319 160/549 (29%)
DEXHc_ERCC6L2 122..369 CDD:350763 73/260 (28%)
VIGSSK <1132..1155 CDD:464308
Blue background indicates that the domain is not in the aligned region.

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