DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment okr and Chd7

DIOPT Version :10

Sequence 1:NP_476661.1 Gene:okr / 33507 FlyBaseID:FBgn0002989 Length:784 Species:Drosophila melanogaster
Sequence 2:NP_001101376.2 Gene:Chd7 / 312974 RGDID:1311921 Length:2985 Species:Rattus norvegicus


Alignment Length:575 Identity:168/575 - (29%)
Similarity:283/575 - (49%) Gaps:88/575 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   153 SNILRPHQREGVRFM----YECVEGKRGNFNGCIMADEMGLGKTLQCVTLVWTLLRQGPECKPTI 213
            :|.||.:|.|||.::    |        |...||:|||||||||:|.:|.::.:..:|..     
  Rat   954 NNKLREYQLEGVNWLLFNWY--------NMRNCILADEMGLGKTIQSITFLYEIYLKGIH----- 1005

  Fly   214 NKAIVVSPSSLVKNWEKEFTKW-------LHGRLLCLPMEGGTKENTIRALEQ-FSMTSARLGTP 270
            ...:|::|.|.:.|||:||..|       .||        ......||:..|. |.....|    
  Rat  1006 GPFLVIAPLSTIPNWEREFRTWTELNVVVYHG--------SQASRRTIQLYEMYFKDPQGR---- 1058

  Fly   271 VLLISYETFRIYAEILCKYEVGM-------------VICDEGHRLKNSDNLTYQALMGLKTKRRV 322
            |:..||:    :..|:..:|:.:             |:.||.|||||.:....:.|..:..:.:|
  Rat  1059 VIKGSYK----FHAIITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKV 1119

  Fly   323 LLSGTPIQNDLTEYYSLVNFVNPEMLGTAAVFKRNFESAILRGQNTDSTEQERQRAIEKTQELIG 387
            ||:|||:||.:.|.:||::|:.|....:...|.:.|...        .||       |:.|:|..
  Rat  1120 LLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEFGDL--------KTE-------EQVQKLQA 1169

  Fly   388 LVDQCIIRRTNQILTKYLPVKFEMVICAKLTAIQLELYTNFLKSDQVRRSLADCNEKASLTALAD 452
            ::...::||..:.:.|.|..|.|.:|..:||.||.:.|...|:.:..  .|:....:|::..|.:
  Rat  1170 ILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFT--FLSKGGGQANVPNLLN 1232

  Fly   453 -ITTLKKICSHPDLI---YEKLTAREKGFENSQNVLPSNYKPKDLNPELSGKFMLLDFMLAAIRA 513
             :..|:|.|:||.||   .||:.   :.|:::.|....:::.:.: .:.:||.:|:|.:|..::|
  Rat  1233 TMMELRKCCNHPYLINGAEEKIL---EEFKDAHNADSPDFQLQAM-IQAAGKLVLIDKLLPKLKA 1293

  Fly   514 EGNDKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDSFLFMLSSKA 578
             |..:|::.|...:.||:.|....:|:|.:.|:||.:....|...:|||:.|:||.|:|:|.::|
  Rat  1294 -GGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRA 1357

  Fly   579 GGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKS 643
            ||.|:||..|:...:||.||||.||.||.||..|.||.|...||||:...|.|.::..:.:.|..
  Rat  1358 GGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLG 1422

  Fly   644 LSSTII------DNNESAEKHFTRDDLKDLFTFDA-NILSDTHDKLKCKRCVQNI 691
            |...::      :|..:..:..::.:::||....| ..|.|..|: ..|.|.::|
  Rat  1423 LDKAVLQSMSGRENATNGVQQLSKKEIEDLLRKGAYGALMDEEDE-GSKFCEEDI 1476

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
okrNP_476661.1 Rad54_N <76..>126 CDD:430137
HepA <156..650 CDD:440319 157/528 (30%)
DEXHc_RAD54A 156..396 CDD:350825 72/264 (27%)
Chd7NP_001101376.2 Med15 <2..>318 CDD:312941
Atrophin-1 194..>567 CDD:460830
CD1_tandem_CHD5-9_like 785..849 CDD:349315
CD2_tandem_CHD5-9_like 868..925 CDD:349310
PLN03142 956..>1555 CDD:215601 167/573 (29%)
BRK 2551..2592 CDD:462196
BRK 2630..2674 CDD:197800
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.