DRSC/TRiP Functional Genomics Resources

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Protein Alignment okr and Smarca5

DIOPT Version :10

Sequence 1:NP_476661.1 Gene:okr / 33507 FlyBaseID:FBgn0002989 Length:784 Species:Drosophila melanogaster
Sequence 2:NP_001424549.1 Gene:Smarca5 / 307766 RGDID:1308832 Length:1072 Species:Rattus norvegicus


Alignment Length:561 Identity:165/561 - (29%)
Similarity:266/561 - (47%) Gaps:82/561 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   156 LRPHQREGVRFMYECVEGKRGNFNGCIMADEMGLGKTLQCVTLVWTLLR----QGPECKPTINKA 216
            ||.:|..|:.::....|   ...|| |:|||||||||||.::|:..:..    .||.        
  Rat   179 LRDYQVRGLNWLISLYE---NGING-ILADEMGLGKTLQTISLLGYMKHYRNIPGPH-------- 231

  Fly   217 IVVSPSSLVKNWEKEFTKWLHG-RLLCLPMEGGTKENTIRALEQFSMTSARLGTPVLLISYETFR 280
            :|:.|.|.:.||..||.:|:.. |.:||.   |.||.....:....:...   ..|.:.|||...
  Rat   232 MVLVPKSTLHNWMSEFKRWVPTLRSVCLI---GDKEQRAAFVRDVLLPGE---WDVCVTSYEMLI 290

  Fly   281 IYAEILCKYEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVNP 345
            ....:..|:....::.||.||:||..:...:.:...||..|:||:|||:||:|.|.:||:||:.|
  Rat   291 KEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLP 355

  Fly   346 EMLGTAAVFKRNFESAILRGQNTDSTEQERQRAIEKTQELIGLVDQCIIRRTNQILTKYLPVKFE 410
            ::..:|..|...|::....|.         |:.:|:   |..::...::||....:.|.||.|.|
  Rat   356 DVFNSADDFDSWFDTNNCLGD---------QKLVER---LHMVLRPFLLRRIKADVEKSLPPKKE 408

  Fly   411 MVICAKLTAIQLELYTNFLKSD-QVRRSLADCNEKASLTALADITTLKKICSHPDLIYEKLTARE 474
            :.|...|:.:|.|.||..|..| .:..|....::...|..|..   |:|.|:||.|         
  Rat   409 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQ---LRKCCNHPYL--------- 461

  Fly   475 KGFENSQNVLPSNYKPKDLN-PELSGKFMLLDFMLAAIRAEGNDKVVLISNYTQTLDLFEQLARK 538
              |:.::   |......|:: ...|||.::||.:|..::.:|: :|::.|..|:.||:.|.....
  Rat   462 --FDGAE---PGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQGS-RVLIFSQMTRVLDILEDYCMW 520

  Fly   539 RKYGFVRLDGTMSIKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPAND 603
            |.|.:.||||.....:|...::.:|:|.|..|:||||::|||.|:||..|:.:.::|.||||..|
  Rat   521 RNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVD 585

  Fly   604 EQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTII------DNN---------- 652
            .|||.|..|.||.|...::|.:...::||:|::|...|..|.|.:|      |.|          
  Rat   586 LQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEML 650

  Fly   653 -----------ESAEKHFTRDDLKDLFTFDANILSDTHDKL 682
                       .|.|...|.:|:..:....|...::.::||
  Rat   651 QMIRHGATHVFASKESEITDEDIDGILERGAKKTAEMNEKL 691

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
okrNP_476661.1 Rad54_N <76..>126 CDD:430137
HepA <156..650 CDD:440319 156/506 (31%)
DEXHc_RAD54A 156..396 CDD:350825 71/244 (29%)
Smarca5NP_001424549.1 None
Blue background indicates that the domain is not in the aligned region.

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