DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment okr and Chd2

DIOPT Version :10

Sequence 1:NP_476661.1 Gene:okr / 33507 FlyBaseID:FBgn0002989 Length:784 Species:Drosophila melanogaster
Sequence 2:NP_001074814.2 Gene:Chd2 / 244059 MGIID:2448567 Length:1827 Species:Mus musculus


Alignment Length:832 Identity:227/832 - (27%)
Similarity:371/832 - (44%) Gaps:158/832 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 GPLRPESRHSFTPPLLKKNKRSCQQELEREQELDRR-----RLGALRDASNT---SELPLPIRFT 67
            |.:.||....|          ||||||  ..||:::     |:.|::.:.:|   ::.|...|..
Mouse   353 GKVSPEDVEYF----------SCQQEL--ASELNKQYQIVERVIAVKTSKSTLGQTDFPAHSRKP 405

  Fly    68 ANSEYELAIAK---------------VLARKFKVPMDNYVPDYGGKRVLGVRRC--ISRRPLHDP 115
            |.|.....:.|               ::.:||:..:|:: ......:.:..|.|  :.:||    
Mouse   406 APSNEPEYLCKWMGLPYSECSWEDEALIGKKFQNCIDSF-HSRNNSKTIPTRECKALKQRP---- 465

  Fly   116 MACNALVLFHPPAYTEHERMGMDPTKVLVHVVVDPLLSNILRPHQREGVRFMYE--CVEGKRGNF 178
               ..:.|...|||...|.:.                   ||.:|.||:.::..  |      ..
Mouse   466 ---RFVALKKQPAYLGGESLE-------------------LRDYQLEGLNWLAHSWC------KS 502

  Fly   179 NGCIMADEMGLGKTLQCVTLVWTLLRQ----GPECKPTINKAIVVSPSSLVKNWEKEFTKWLHGR 239
            |..|:|||||||||:|.::.:..|..|    ||        .::|.|.|.:.:|::||..|....
Mouse   503 NSVILADEMGLGKTIQTISFLSYLFHQHQLYGP--------FLIVVPLSTLTSWQREFEIWAPEI 559

  Fly   240 LLCLPMEGGTKENTIRALEQFSMTSARLGTPVLLISYETFRIYAEILCKYEVGMVICDEGHRLKN 304
            .:.:.:......||||..|.....:.||....|:.:||.......:|.......:..||.|||||
Mouse   560 NVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLKN 624

  Fly   305 SDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTAAVFKRNFESAILRGQNTD 369
            .|:|.|:.|:..|:..|:|::|||:||.|.|.:||::|:.||..    .|..:||..  .|:..:
Mouse   625 DDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKF----EFWEDFEED--HGKGRE 683

  Fly   370 STEQERQRAIEKTQELIGLVDQCIIRRTNQILTKYLPVKFEMVICAKLTAIQLELYTNFLKSDQV 434
            :..|...:.:|          ..::||..:.:.|.||.|.|.::..:::|:|.:.|...|..:. 
Mouse   684 NGYQSLHKVLE----------PFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNY- 737

  Fly   435 RRSLADCNEKASLTALADITTLKKICSHPDLI-YEKLTAREKGFENSQNVLPSNYKPKDLNPELS 498
             ::||.....::...|..:..|||.|:|..|| ..:.:.||.|.|..|:::.|           |
Mouse   738 -KALAKGTRGSTSGFLNIVMELKKCCNHCYLIKAPEDSERESGQEVLQSLIRS-----------S 790

  Fly   499 GKFMLLDFMLAAIRAEGNDKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFN 563
            ||.:|||.:|..:|..|| :|::.|...:.||:..:....:.|.|.||||::..:.|.:.:|.||
Mouse   791 GKLILLDKLLTRLRERGN-RVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFN 854

  Fly   564 DPESDSFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASG 628
            ...|:.|.|:||::|||.|:||..|:.:.:||.||||.||.||.||..|.||||...|||||..|
Mouse   855 ADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKG 919

  Fly   629 SIEEKILQRQTHKKSL-----------SSTIIDNN--ESAEKHFTRDDLKDLFTFDANILSDTHD 680
            ::||:|::|...|..|           ..|:::||  .|....|.:::|..:..|.|..|.    
Mouse   920 TVEEEIIERAKKKMVLDHLVIQRMDTTGRTVLENNSGRSNSNPFNKEELTAILKFGAEDLF---- 980

  Fly   681 KLKCKRCVQNIQMKPPPEDTDCTSHLSQWYHCSNNRGLPDNILAQAWMDCKCVSFVFHHRSQA-- 743
                 :.::..:.:|...|.|....|::......:....|.:|:|    .|..:|......:.  
Mouse   981 -----KEIEGEESEPQEMDIDEILRLAETRENEVSTSATDELLSQ----FKVANFATMEDEEELE 1036

  Fly   744 -------QEIVPSAEEEATDQPEEKPE-------SRKRSST-PASDDSADED 780
                   .||:|..:.:..::.|.:.|       .|.|||| .|..:.:|.|
Mouse  1037 ERPHKDWDEIIPEEQRKKVEEEERQKELEEIYMLPRIRSSTKKAQTNDSDSD 1088

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
okrNP_476661.1 Rad54_N <76..>126 CDD:430137 9/66 (14%)
HepA <156..650 CDD:440319 165/511 (32%)
DEXHc_RAD54A 156..396 CDD:350825 72/245 (29%)
Chd2NP_001074814.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..264
CD1_tandem_CHD1-2_like 259..343 CDD:349313
CD2_tandem_CHD1-2_like 376..447 CDD:349308 11/71 (15%)
DEXHc_CHD2 464..700 CDD:350812 79/291 (27%)
PLN03142 468..>1021 CDD:215601 185/628 (29%)
DEAH box 617..620 2/2 (100%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1030..1124 13/59 (22%)
CDH1_2_SANT_HL1 1130..1218 CDD:465731
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1329..1465
CHD1 helical C-terminal domain (CHCT). /evidence=ECO:0000250|UniProtKB:O14646 1464..1566
DUF4208 1471..1553 CDD:464035
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1556..1638
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1679..1827
Blue background indicates that the domain is not in the aligned region.

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