DRSC/TRiP Functional Genomics Resources

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Protein Alignment okr and Smarcad1

DIOPT Version :10

Sequence 1:NP_476661.1 Gene:okr / 33507 FlyBaseID:FBgn0002989 Length:784 Species:Drosophila melanogaster
Sequence 2:NP_031984.1 Gene:Smarcad1 / 13990 MGIID:95453 Length:1021 Species:Mus musculus


Alignment Length:561 Identity:167/561 - (29%)
Similarity:282/561 - (50%) Gaps:96/561 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   156 LRPHQREGVRFMYECVEGKRGNFNGCIMADEMGLGKTLQCVTLVWTLLRQGPECKPTINKA--IV 218
            |:|:|:.|:.::  .:..|.| .|| |:|||||||||:|.:..:..|.::|       ||.  ::
Mouse   492 LKPYQKVGLNWL--ALVHKHG-LNG-ILADEMGLGKTIQAIAFLAYLFQEG-------NKGPHLI 545

  Fly   219 VSPSSLVKNWEKEFTKWLHG-RLLCLPMEGGTKENTIRALEQFSMTSARLGTPVLLISY------ 276
            |.|:|.:.||.:|...|... .:||.   .|::|.  |...:|::.:......|::.:|      
Mouse   546 VVPASTIDNWLREVNLWCPSLNVLCY---YGSQEE--RKQIRFNIHNKYEDYNVIVTTYNCAISS 605

  Fly   277 ----ETFRIYAEILCKYEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYY 337
                ..||       :.::...|.||||.|||..::.||.||.:..:.|:||:|||:||:|.|..
Mouse   606 SDDRSLFR-------RLKLNYAIFDEGHMLKNMGSIRYQHLMTINARNRLLLTGTPVQNNLLELM 663

  Fly   338 SLVNFVNPEMLGTA-AVFKRNFESAILRGQNTDSTEQ---ERQRAIEKTQELIGLVDQCIIRRTN 398
            ||:|||.|.|..:: :..:|.|.|     :...:.||   |::|.....|    ::...|:||..
Mouse   664 SLLNFVMPHMFSSSTSEIRRMFSS-----KTKPADEQSIYEKERIAHAKQ----IIKPFILRRVK 719

  Fly   399 QILTKYLPVKFEMVICAKLTAIQLELYTNFLKSDQVRRSLADCNEKASLTALADITTLKKICSHP 463
            :.:.|.||.|.:.:....::..|.:||:...  :::::|:.:..:...:..:  :..|:|:.:||
Mouse   720 EEVLKLLPPKKDRIELCAMSEKQEQLYSGLF--NRLKKSINNLEKNTEMCNV--MMQLRKMANHP 780

  Fly   464 DLIYEKLTAREKGFENSQNVL--PSNYKPKDLNPEL----------------------------- 497
             |::.:....||..|.||.:|  |::.   :.||:|                             
Mouse   781 -LLHRQYYTPEKLKEMSQLMLKEPTHC---EANPDLIFEDMEVMTDFELHVLCKQYQHINSYQLD 841

  Fly   498 ------SGKFMLLDFMLAAIRAEGNDKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRS 556
                  ||||..|..:|:.::.:| |:|||.|.:|..||:.|.|.:..::.::||||...|.:|.
Mouse   842 MDLILDSGKFRALGCILSELKQKG-DRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERI 905

  Fly   557 KVVDRFNDPESDSFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYI 621
            .::|.|| .:.|.|:|:||:||||.|:||..||.:.:.|.|.||.||:||..|..|.||.|...:
Mouse   906 HLIDEFN-TDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLV 969

  Fly   622 YRLVASGSIEEKILQRQTHKKSLSSTIIDNNESAEKHFTRD 662
            .:|::.|:|||.:|:....|..|...:...:|:.|.....|
Mouse   970 IKLISQGTIEESMLKINQQKLKLEQDMTTVDEADEGSMPAD 1010

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
okrNP_476661.1 Rad54_N <76..>126 CDD:430137
HepA <156..650 CDD:440319 164/547 (30%)
DEXHc_RAD54A 156..396 CDD:350825 78/256 (30%)
Smarcad1NP_031984.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..82
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 124..151
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 201..246
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 329..366
HepA <480..992 CDD:440319 163/541 (30%)
DEGH box 623..626 2/2 (100%)
Nuclear localization signal. /evidence=ECO:0000255 716..733 6/16 (38%)
DEAD box 1000..1003 1/2 (50%)
Blue background indicates that the domain is not in the aligned region.

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