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Protein Alignment gammaTub23C and Tubb5

DIOPT Version :10

Sequence 1:	NP_476804.1	Gene:	gammaTub23C / 33501	FlyBaseID:	FBgn0260639	Length:	475	Species:	Drosophila melanogaster
Sequence 2:	NP_775125.1	Gene:	Tubb5 / 29214	RGDID:	628596	Length:	444	Species:	Rattus norvegicus

Alignment Length:	457	Identity:	159/457 - (34%)
Similarity:	263/457 - (57%)	Gaps:	32/457 - (7%)

- Green bases have known domain annotations that are detailed below.

  Fly     4 EIITLQLGQCGNQIGFEFWKRLCLEHGISPSGVLEDFANDGLDRKDVFFYQADDDHYIPRAVLLD 68
            ||:.:|.||||||||.:||:.:..||||.|:|.....::..|||..|::.:|....|:|||:|:|
  Rat     3 EIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVPRAILVD 67

  Fly    69 LEPRVINTIMGSVYSKLYNPENVYLSKHGGGAGNNWASG-YSQGEKLQEEVFDIIDREADGSDSL 132
            |||..::::....:.:::.|:|....:  .|||||||.| |::|.:|.:.|.|::.:||:..|.|
  Rat    68 LEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCL 130

  Fly   133 EGFILCHSIAGGTGSGMGSFIMERLADRYPKKLIQTFSVFPNQDEISDVVVQPYNSMLTLKRLTT 197
            :||.|.||:.||||||||:.::.::.:.||.:::.||||.|: .::||.||:|||:.|::.:|..
  Rat   131 QGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPS-PKVSDTVVEPYNATLSVHQLVE 194

  Fly   198 AADSVVVLDNTALNRIACDRLHIQNPSFSQINNLVSTIMSVSTTTLRYPSYMNNNLIGLTAPLIP 262
            ..|....:||.||..|....|.:..|::..:|:|||..||..||.||:|..:|.:|..|...::|
  Rat   195 NTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVP 259

  Fly   263 TPQLHFLMTGYTPLTSDSDIHTQQLVNVRKTTVLDVMRRLLQPKNMMVSTGPDKSNHHCYISILN 327
            .|:|||.|.|:.||||..   :||   .|..||.::.:::...||||.:..|   .|..|:::..
  Rat   260 FPRLHFFMPGFAPLTSRG---SQQ---YRALTVPELTQQVFDAKNMMAACDP---RHGRYLTVAA 315

  Fly   328 IIQGEVDPTQVHKSLQRIRDRKMAQFIPWGPTSIQVALSRSSPYVQSNHRVSGLMLA-----NHT 387
            :.:|.:...:|.:.:..::::..:.|:.|.|.:::.|:....|        .||.:|     |.|
  Rat   316 VFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP--------RGLKMAVTFIGNST 372

  Fly   388 SICSLFERALNQYDKLRKRGAFLDQFRREDIFKDDLNELDESRETVDCLV---QEYEAATREDYM 449
            :|..||:|...|:..:.:|.|||..:..|.:   |..|..|:...::.||   |:|:.||.|:..
  Rat   373 AIQELFKRISEQFTAMFRRKAFLHWYTGEGM---DEMEFTEAESNMNDLVSEYQQYQDATAEEEE 434

  Fly   450 QF 451
            .|
  Rat   435 DF 436

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.