DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vmat and slc18a2

DIOPT Version :10

Sequence 1:NP_001014525.1 Gene:Vmat / 3346192 FlyBaseID:FBgn0260964 Length:646 Species:Drosophila melanogaster
Sequence 2:XP_031762366.1 Gene:slc18a2 / 101732756 XenbaseID:XB-GENE-940058 Length:515 Species:Xenopus tropicalis


Alignment Length:497 Identity:279/497 - (56%)
Similarity:346/497 - (69%) Gaps:68/497 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   130 WMVSWRGSNRLVLVIVAIALLLDNMLLTTVVPIIPEFLY----------DIRHPD-APLDSF--- 180
            |:...|.|.:|:|:||.|||||||||||.||||||.:||          |..||. ||..|.   
 Frog    11 WLREGRQSRKLILLIVFIALLLDNMLLTVVVPIIPSYLYTMTHEGNSSQDEAHPSTAPGGSHSIF 75

  Fly   181 -------------------PR---TPLTSNVPPPPT--PCPCNKDGSEAAPLEISTISPEENETY 221
                               ||   ||.:|..|.|||  |..|.:..|                  
 Frog    76 SYYDNTTVTITNSTRSTHQPRSAVTPTSSPSPSPPTAPPADCPRADS------------------ 122

  Fly   222 YRELEERHNELVGETVEVGLLFASKAFVQLLVNPIVGPLTHRIGYSIPMFAGFVIMFLSTIIFAF 286
                     .|:.|.|:|||||||||.||||.||.:||:|:||||.|||||||.|||:|||:|||
 Frog   123 ---------SLLNENVKVGLLFASKATVQLLTNPFIGPMTNRIGYQIPMFAGFCIMFVSTIMFAF 178

  Fly   287 GRSYLVLFVARALQGIGSSCSSVSGMGMLADRFTDDKERGNAMGIALGGLALGVLIGPPFGGVMY 351
            ..||.:||:||:|||||||||||:||||||..:|||:||||||||||||||:|||:|||||.::|
 Frog   179 SGSYALLFIARSLQGIGSSCSSVAGMGMLASVYTDDEERGNAMGIALGGLAMGVLVGPPFGSILY 243

  Fly   352 EFVGKSAPFLILAALALGDGLLQLFMLQPS-IQ-KAETEPPSLKSLISDPYILIAAGAITFANMG 414
            |||||:||||:||.|.|.||.||||:|||| :| :::|..| |.:||.|||||||||:|.||||.
 Frog   244 EFVGKTAPFLVLAVLVLFDGALQLFVLQPSRVQPESQTGTP-LLTLIRDPYILIAAGSICFANMA 307

  Fly   415 IAMLEPSLPLWMVDNMGATRWEQGVAFLPASISYLIGTNLFGPLGHKIGRWFAACLGLIIIGGCL 479
            ||||||:||:||::.|.:.:|:.||||||||||||||||:||||.||:|||..|.:|:|::|..:
 Frog   308 IAMLEPALPIWMMETMCSRKWQLGVAFLPASISYLIGTNVFGPLAHKMGRWLCAFIGMIVVGISI 372

  Fly   480 IFIPMATSITHLIIPNAGLGFAIGMVDSSMMPELGYLVDIRHSAVYGSVYALGDVAFCVGFAVGP 544
            |.:|.|.:|..||.|..|:|||||||||||||.:|||||:||.:|||||||:.|||||:|||.||
 Frog   373 ICVPFARNIYGLIAPTFGVGFAIGMVDSSMMPIMGYLVDLRHVSVYGSVYAIADVAFCMGFAFGP 437

  Fly   545 ALSGSLVKSIGFEWMLFGIAILCFMYAPLLTLLKNPPTSDEK 586
            :..|::.|||||.|::..|.::..::|||...|::||..:||
 Frog   438 SAGGAIAKSIGFPWLMTIIGVVDVLFAPLCLFLRSPPAREEK 479

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VmatNP_001014525.1 MFS_SLC18A1_2_VAT1_2 141..578 CDD:340942 270/476 (57%)
slc18a2XP_031762366.1 MFS_SLC18A1_2_VAT1_2 22..471 CDD:340942 270/476 (57%)

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