DRSC/TRiP Functional Genomics Resources

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Protein Alignment aop and gabpa

DIOPT Version :10

Sequence 1:NP_523455.2 Gene:aop / 33392 FlyBaseID:FBgn0000097 Length:732 Species:Drosophila melanogaster
Sequence 2:NP_571662.1 Gene:gabpa / 58110 ZFINID:ZDB-GENE-011010-2 Length:455 Species:Danio rerio


Alignment Length:197 Identity:66/197 - (33%)
Similarity:102/197 - (51%) Gaps:27/197 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   311 WSQQQQQQQQQQAAAVAAVAAQAQQHQLQQQQQQQQLPQKLTLDNTAGPV-VTPAGGSISAPTTP 374
            :||::..|:......:.:.....:::.|..|.|.|:  ..:|:|.   || :.||....:.||..
Zfish   219 FSQEEFLQRVPSGEILWSHLELLRKYVLASQDQSQE--ATVTIDQ---PVQIIPAPVQQATPTAI 278

  Fly   375 SYMYKAKREFFP-----ENSEP----NTNGRL-LWDFLQQLLNDRNQKYSDLIAWKCRDTGVFKI 429
            ..|...|....|     |.|.|    ..||:: ||.||.:||.|::.:  |.|:| ..:.|.||:
Zfish   279 KVMKHNKTPRAPRISGEERSSPGNRTGNNGQIQLWQFLLELLTDKDSR--DCISW-VGEEGEFKL 340

  Fly   430 VDPAGLAKLWGIQKNHLSMNYDKMSRALRYYYRVNILRKVQGERHCYQF---LR-----NPTELK 486
            ..|..:|:.||.:||..:|||:|:||||||||..:::.||||:|..|:|   ||     :..||.
Zfish   341 NQPELVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMISKVQGKRFVYKFVCDLRTLIGYSAAELN 405

  Fly   487 NI 488
            |:
Zfish   406 NL 407

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
aopNP_523455.2 SAM_PNT-Tel_Yan 49..116 CDD:176085
ETS 395..482 CDD:197710 41/95 (43%)
gabpaNP_571662.1 GABP-alpha 40..118 CDD:463311
SAM_PNT-GABP-alpha 162..248 CDD:176084 4/28 (14%)
ETS 309..394 CDD:197710 38/87 (44%)
Blue background indicates that the domain is not in the aligned region.

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