DRSC/TRiP Functional Genomics Resources

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Protein Alignment Charon and Asb18

DIOPT Version :10

Sequence 1:NP_608581.2 Gene:Charon / 33303 FlyBaseID:FBgn0031317 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_001101701.1 Gene:Asb18 / 316614 RGDID:1310850 Length:467 Species:Rattus norvegicus


Alignment Length:158 Identity:35/158 - (22%)
Similarity:52/158 - (32%) Gaps:58/158 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   248 RIMANEFRKSHIMSEEGLLPIH-----------EEIL-HGDVY----GVKR-------------- 282
            |::........::|.|||.|:|           :|:| ||...    |..|              
  Rat   169 RLLLQHGADPDLLSSEGLAPLHLCRTPASLGCAQELLEHGATVQLEGGPNRDTPLHVAAQRGLDK 233

  Fly   283 --QIFVCCHAKMDINE------------LLTRDGED---CLELALTNDTDTEIVSLILDARMMTD 330
              |:::.|.|::|...            ...|..|:   ||.|.          :|:|.....||
  Rat   234 HAQLYLGCGARVDARNGRGETALSAACGAAARSPEEHARCLRLC----------ALLLRGGAATD 288

  Fly   331 HLYENSNTALHLAVINHINIESIRLLLR 358
            ...|:..:.||.| ..|.......||||
  Rat   289 MRDEDERSPLHKA-CGHARPGLCTLLLR 315

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CharonNP_608581.2 ANKYR 290..513 CDD:440430 20/84 (24%)
ANK repeat 301..333 CDD:293786 8/34 (24%)
ANK repeat 335..369 CDD:293786 8/24 (33%)
ANK repeat 371..455 CDD:293786
ANK repeat 457..488 CDD:293786
Asb18NP_001101701.1 ANKYR <119..336 CDD:440430 35/158 (22%)
ANK repeat 122..149 CDD:293786
ANK repeat 151..182 CDD:293786 1/12 (8%)
ANK repeat 184..214 CDD:293786 9/29 (31%)
ANK repeat 218..249 CDD:293786 5/30 (17%)
PTZ00322 283..>366 CDD:140343 11/34 (32%)
ANK repeat 293..324 CDD:293786 8/24 (33%)
ANK repeat 326..357 CDD:293786
SOCS_ASB4_ASB18 420..467 CDD:239693
Blue background indicates that the domain is not in the aligned region.

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