DRSC/TRiP Functional Genomics Resources

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Protein Alignment GABA-B-R3 and LOC560647

DIOPT Version :10

Sequence 1:NP_523447.2 Gene:GABA-B-R3 / 33248 FlyBaseID:FBgn0031275 Length:1305 Species:Drosophila melanogaster
Sequence 2:XP_021322611.1 Gene:LOC560647 / 560647 -ID:- Length:903 Species:Danio rerio


Alignment Length:982 Identity:279/982 - (28%)
Similarity:441/982 - (44%) Gaps:162/982 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   152 KIVLLGLFELSTSRGPRPDGLSELGAATMAVEHINRKRL-LPGYTLELVTNDTQCDPGVGVDRFF 215
            |:.:|.:..||.:.|........|.|..:|::|::.:.. |..|.|:....|::||....:..||
Zfish    29 KLPVLWIMPLSGAPGKGNITAEVLPAVELALQHLSEQTSNLANYELQFHLTDSECDNSKALKAFF 93

  Fly   216 HAIYTQPSTRMVMLLGSACSEVTESLAKVVPYWNIVQVSFGSTSPALSDRREFPYFYRTVAPDSS 280
            ..|::.|  :.:|:.|.|||.||..||:.:..||:||:||..|.|.|:|:|.||.|:|||..||:
Zfish    94 ETIFSGP--KPLMIFGGACSSVTSVLAQSLESWNLVQLSFAVTVPLLADKRRFPNFFRTVPSDSA 156

  Fly   281 HNPARIAFIRKFGWGTVTTFSQNEEVHSLAVNNLVTELEAANISCAATITF--AATDFKEQLLLL 343
            .|.|.:.|:|::||..|.|.:|.|:..:....:|...||.|||..|...:|  |..|..::   |
Zfish   157 VNVALVRFLRQYGWSRVGTLTQREQSFTEVQTDLNRHLEEANIQLAEAESFSEAPCDCVKK---L 218

  Fly   344 RETDTRIIIGSFSQELAPQILCEAYRLRMFGADYAWILHESMGAPWWPD-QRTACSNHELQLAVE 407
            ::.|.||:|..|.|.||.::.|..|.::|:|..|.|||.|.:.:..|.| ..|.|::..:..|:|
Zfish   219 KDNDVRIVIAHFDQSLAAKVFCCIYNVKMYGQKYQWILPEWVQSSRWTDIDSTNCTSENILTAIE 283

  Fly   408 NLIVVSTHNSIVGNNVSYSGLNNHMFNSQLRKQSAQFHGQDGFGSGYGSRISIAATQSDSRRRRR 472
            ..|.....:               :.:|.:|              |...|......:..:.||:.
Zfish   284 GSISADIES---------------LSSSHIR--------------GISGRTPQEYEKEYNERRQM 319

  Fly   473 RGVGGTSGGHLFPEAISQYAPQTYDAVWAIALALRAAEEHWRRNEEQSKLDGFDYTRSDMAWEFL 537
            :.:||           |::....||..|.||.||....|..:..|..|....|..|..::....|
Zfish   320 KQLGG-----------SKFHGFAYDGTWVIAKALTRVMETVKYRERYSVHRNFTLTDQEVGQMIL 373

  Fly   538 QQMGKLHFLGVSGPVSFSGPDRVGTTAFYQIQRGLLEPVALYYPATDALDFRCP----RCRPVKW 598
            :.|.|::|.||:|.|.|...:||....|.|.|.|....:..|...||.|:|..|    :.:|.|.
Zfish   374 EAMDKINFFGVTGHVMFQKGERVANVKFAQYQDGKAVDIEKYSAITDELEFISPIRFHKDKPTKD 438

  Fly   599 HSGQVPIAKRVFKLRVATIAPLAFYTIATLSSVGIALAIAFLAFNLHFRKLKAIKLSSPKLSNIT 663
            .:...|..||:..|..|.::.|.|        :||..|..||.|:|..|...||.:|.|.::::.
Zfish   439 RTHVYPHRKRISILLYAIVSFLTF--------LGIFTACIFLVFSLKHRSHWAISMSRPLMNSLI 495

  Fly   664 AVGCIFVYATVILLGLDHSTLPSAEDSFATVCTARVYLLSAGFSLAFGSMFAKTYRVHRIFTRTG 728
            .:|.:..|:::..:|||.|.:  ::..|...||.::..||.|.:.|||:||||.:::| :|.:..
Zfish   496 ILGAVLSYSSIFFMGLDGSYV--SDRVFEVSCTVQISCLSIGCTTAFGAMFAKIWQIH-LFFKNH 557

  Fly   729 SVFKDKMLQDIQLILLVGGLLLVD-ALLVTLWVVTDPMERHLHNLTLEISATDRSVVYQPQVEVC 792
            |:.| |..::....|||..|.|:| :||::|.|: ||..|.:....::.....:....||..|.|
Zfish   558 SIDK-KNTKNYGPNLLVILLFLIDLSLLISLQVL-DPFRRTVKEYRIQPHPHGQDFFIQPFSERC 620

  Fly   793 RSQHTQTWLSVLYAYKGLLLVVGVYMAWETRHVKIPALNDSQYIGVSVYSVVITSAIVVVLANLI 857
            .:.|...|::..|.|||.||:...::||.|||:.|||:|||:.|..||:    .|..|:::....
Zfish   621 ENTHGLFWMAAFYIYKGTLLLSTCFLAWSTRHMNIPAVNDSRSIRFSVF----VSVPVILIGTCA 681

  Fly   858 S----ERVTLAFITITALILTSTTATLCLLFIPKLHDIWARNDII-----DPVI----------H 903
            |    .|..:.|..:|.:|:|....|||::|:||:        ||     ||..          |
Zfish   682 SMFWQHRPNVQFCIVTLVIVTCCCCTLCMVFVPKI--------IIIRMGPDPAFLSRRFHLKQWH 738

  Fly   904 SMGLKMECNTRR-----------------FVVDDRRELQYRVEV---QNRVYKKEIQALDAEIRK 948
            |   ::|..|.:                 |::|....:...:.:   :|...::.|..||:|:..
Zfish   739 S---ELEKETEQNKDKRCMLEQRDPGLSVFMIDATLSISSSLTIHQSENLYLRRHINYLDSELED 800

  Fly   949 LERLLESGLTTTSTTTSSSTSLLTGGGHLKPELTVTSGISQTPAASKNRTPSISGILPNLLLSVL 1013
            |.|.|  .|..||             .|...::.||..:.:|........|..|....||...:.
Zfish   801 LTRQL--NLNETS-------------AHAMEKVIVTGFVHKTAKDKCLTLPESSRCDRNLHQDIN 850

  Fly  1014 PP--VIPRASWPSAEYMQIPMRRSVTFASQPQLEEACLPA-----QDLINLRLAHQQATEAKTGL 1071
            .|  |..|.|      :|:|:           |..|.||:     :|...|....|..|....||
Zfish   851 SPEHVRRRLS------LQLPI-----------LHHAYLPSVGGVMEDSSPLYSPLQTPTTGSYGL 898

  Fly  1072 INRLRGI 1078
            :  |.|:
Zfish   899 L--LTGL 903

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GABA-B-R3NP_523447.2 PBP1_GABAb_receptor 156..600 CDD:380589 135/451 (30%)
7tmC_GABA-B-like 621..892 CDD:320175 90/275 (33%)
TM helix 1 621..645 CDD:320175 7/23 (30%)
TM helix 2 657..678 CDD:320175 3/20 (15%)
TM helix 3 696..720 CDD:320175 11/23 (48%)
TM helix 4 741..761 CDD:320175 9/20 (45%)
TM helix 5 797..823 CDD:320175 9/25 (36%)
TM helix 6 832..855 CDD:320175 7/22 (32%)
TM helix 7 862..887 CDD:320175 8/24 (33%)
LOC560647XP_021322611.1 PBP1_GABAb_receptor 35..425 CDD:380589 130/434 (30%)
7tm_GPCRs 453..720 CDD:475119 94/291 (32%)
TM helix 1 453..477 CDD:320421 9/31 (29%)
TM helix 2 489..510 CDD:320421 3/20 (15%)
TM helix 3 526..548 CDD:320421 11/21 (52%)
TM helix 4 571..587 CDD:320421 8/15 (53%)
TM helix 5 625..648 CDD:320421 7/22 (32%)
TM helix 6 661..683 CDD:320421 6/25 (24%)
TM helix 7 690..715 CDD:320421 8/24 (33%)
Lzipper-MIP1 730..806 CDD:464163 14/80 (18%)

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