DRSC/TRiP Functional Genomics Resources

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Protein Alignment GABA-B-R3 and Gpr156

DIOPT Version :10

Sequence 1:NP_523447.2 Gene:GABA-B-R3 / 33248 FlyBaseID:FBgn0031275 Length:1305 Species:Drosophila melanogaster
Sequence 2:NP_695207.2 Gene:Gpr156 / 260430 RGDID:708438 Length:792 Species:Rattus norvegicus


Alignment Length:783 Identity:177/783 - (22%)
Similarity:299/783 - (38%) Gaps:144/783 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   614 VATIAPLAFYTIATLSSVGIALAIAFLAFNLHFRKLKAIKLSSPKLSNITAVGCIFVYATVILLG 678
            ::.::|.....|.|..|.|:.|.:.||||.:..||.:.:|:|||.|:.:|.:|....|::..|.|
  Rat    42 ISPLSPALLGVIWTFLSCGLLLVLFFLAFTIRCRKNRIVKMSSPNLNIVTLLGSCLTYSSAYLFG 106

  Fly   679 LDHSTLPSAEDSFATVCTARVYLLSAGFSLAFGSMFAKTYRVHRIFTRTGSVFKDK--MLQDIQL 741
            :..:.:.|   |...:...|:.||..|.:|.||.:..|::|::::||:.   ..||  :::|:||
  Rat   107 IQDALVGS---SVEALIQTRLSLLCIGTTLVFGPILGKSWRLYKVFTQR---VPDKRVIIKDLQL 165

  Fly   742 ILLVGGLLLVDALLVTLWVVTDPMERHLHNLTLEISATDRSVVYQ-PQVEVCRSQHTQTWLSVLY 805
            :.||..|::.|.:|:..||:|||:: .|..|.:.:..|.|.|... .....|.|:::..|::::.
  Rat   166 LGLVAALVVADVILLVTWVLTDPIQ-CLQILGVSMKVTGRDVSCSLTNTHFCASRYSDVWIALVL 229

  Fly   806 AYKGLLLVVGVYMAWETRHVKIPALNDSQYIGVSVYSVVITSAIVVVLANLISERVTLAFITITA 870
            ..|||||:.|.|:|..|.||..|.:|.|..|.|.|..:::|:.::.|:...:.....|.|...:.
  Rat   230 GCKGLLLLYGAYLAGLTNHVSSPPVNQSLTIMVGVNLLLLTAGLLFVVTRYLHSWPNLVFGLTSG 294

  Fly   871 LILTSTTATLCLLFIPKLHDIWA---RNDIIDPVIHSMGLKMECNTRRFVVDDRRELQYRVEVQN 932
            .|...||...|.:|:|:|....|   .|..|..:........:....:|..|....|:.......
  Rat   295 GIFVCTTTVNCCVFLPQLRQRKAFEGENQTIRHMAKYFSTPSKTFRSKFDEDQSCHLRDEKSCME 359

  Fly   933 RVYKKE---IQALDAEI----RKLERLL-------------------------------ESGLTT 959
            |:..::   |::|..::    .||.:|:                               |||...
  Rat   360 RLLTEKNAVIESLQEQVSNAKEKLVKLMSAECALDSPEWAVPAAASAGGPAECPATSEKESGAAA 424

  Fly   960 TSTTTSSSTSL-LTGGGHLKPELT-----------------VTSGISQTPAASKNRTPS------ 1000
            ..:..:|:.|. :.|.|..:.:.:                 :..|.||.|.|.::..|.      
  Rat   425 EDSLPASAASQHMQGPGASRRDASPSPDQKYDMPLKQFCDHLDMGCSQKPKAEQSEGPERGNQEP 489

  Fly  1001 --------ISGIL-----PNLLLSVLPPVIPRASWPSAEYMQIPMRRSVTFASQPQLEEACLPAQ 1052
                    ..|:.     |.....|||..:||.|....|.:| .:.:.:...::..|.....|.|
  Rat   490 MAPGQSLMTDGVACEPHRPRQNSEVLPERLPRVSSVVREKLQ-EVLQELDLGTEAPLSPLPCPQQ 553

  Fly  1053 D-LINLRLAHQQATEAKTGL---INRLRGIFSRTTSSNKGSTASLADQKGLKAAFKSHMGLFTRL 1113
            . ..|...:.|:.:.:|.|.   :.|.|....|..|...||.......:.......|..||..:.
  Rat   554 PWKSNTSGSPQKLSPSKLGFSPYVVRRRRAAQRARSRIPGSVGLKMGHQANNTVSGSQNGLIVQN 618

  Fly  1114 IPSSQTASCNAIYNNPNQDSIPSEASSHPNGNHLKPIHRGSLTKSGTHLDHLTKDPN-------- 1170
            ..|.:....||....|...|:.....|.|:.      .||||..|    .....:|.        
  Rat   619 RDSPRLDHHNARSKEPRSSSVKPSPISAPHQ------RRGSLEGS----KQCETEPQEARGYSVA 673

  Fly  1171 FLPIPTISGGEQGDQTLGGKYVKLLETKVNFQLPSNRRPSVVQQP--PSLR-------ERVRGSP 1226
            |...|:.|...|...      ...|.:..  .||..|:|..:..|  |||.       .....|.
  Rat   674 FPRQPSASAPAQSST------APCLSSSP--ALPRQRQPLPLLSPGCPSLSSGCYNLDSESSSSD 730

  Fly  1227 RFPHRILPPTCSL---SALAESEDRPGDSTSILGSCKSIPRISLQQATSGGTWKSMETAGKSRLS 1288
            .|..|...|.|.:   |:|..::....||             .|:|.:...:|:.:....|..::
  Rat   731 EFFCRCHRPYCEICFQSSLDSNDSDTSDS-------------DLEQTSGLASWEKLLARSKPVVN 782

  Fly  1289 LGD 1291
            ..|
  Rat   783 FKD 785

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GABA-B-R3NP_523447.2 PBP1_GABAb_receptor 156..600 CDD:380589
7tmC_GABA-B-like 621..892 CDD:320175 85/273 (31%)
TM helix 1 621..645 CDD:320175 9/23 (39%)
TM helix 2 657..678 CDD:320175 6/20 (30%)
TM helix 3 696..720 CDD:320175 8/23 (35%)
TM helix 4 741..761 CDD:320175 7/19 (37%)
TM helix 5 797..823 CDD:320175 9/25 (36%)
TM helix 6 832..855 CDD:320175 6/22 (27%)
TM helix 7 862..887 CDD:320175 7/24 (29%)
Gpr156NP_695207.2 7tmC_GPR156 48..317 CDD:320419 85/275 (31%)
TM helix 1 48..73 CDD:320419 9/24 (38%)
TM helix 2 85..106 CDD:320419 6/20 (30%)
TM helix 3 121..145 CDD:320419 8/23 (35%)
TM helix 4 165..185 CDD:320419 7/19 (37%)
TM helix 5 221..247 CDD:320419 9/25 (36%)
TM helix 6 256..279 CDD:320419 6/22 (27%)
TM helix 7 286..311 CDD:320419 7/24 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 407..457 7/49 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 469..516 9/46 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 538..704 37/183 (20%)
Blue background indicates that the domain is not in the aligned region.

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