DRSC/TRiP Functional Genomics Resources

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Protein Alignment GABA-B-R3 and gpr156

DIOPT Version :10

Sequence 1:NP_523447.2 Gene:GABA-B-R3 / 33248 FlyBaseID:FBgn0031275 Length:1305 Species:Drosophila melanogaster
Sequence 2:XP_004919836.1 Gene:gpr156 / 101730302 XenbaseID:XB-GENE-962217 Length:792 Species:Xenopus tropicalis


Alignment Length:660 Identity:148/660 - (22%)
Similarity:268/660 - (40%) Gaps:113/660 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   628 LSSVGIALAIAFLAFNLHFRKLKAIKLSSPKLSNITAVGCIFVYATVILLGLDHSTLPSAEDSFA 692
            |.|.|:.|.:.|..|.|.||..:.:|:|||.|:.:|.:|....|.:..|..:....:     |..
 Frog    54 LLSAGLLLTLFFFIFTLRFRSNRIVKMSSPNLNLVTLIGSALTYISAFLFVVQEPNI-----SME 113

  Fly   693 TVCTARVYLLSAGFSLAFGSMFAKTYRVHRIFTRTGSVFKDK--MLQDIQLILLVGGLLLVDALL 755
            |:...|:.||..|.:|.||.:..|::|:||:||..   ..||  :::|:.|:.||.|||..|.||
 Frog   114 TIFQVRISLLYLGVTLVFGPLLGKSWRLHRVFTHR---VPDKRVIIKDVTLLSLVAGLLFADTLL 175

  Fly   756 VTLWVVTDPMERHLHNLTLEISATDRSVVYQPQV-EVCRSQHTQTWLSVLYAYKGLLLVVGVYMA 819
            :.:||::||:. ...:.:..|.|..|..:|.... :.|.|:::..|..:|..:|..||:.|.|:|
 Frog   176 LLMWVLSDPVV-CARSASASIKAAARGTLYSVTTQDFCASKYSDLWTGLLVGFKAALLIYGGYLA 239

  Fly   820 WETRHVKIPALNDSQYIGVSVYSVVITSAIVVVLANLISERVTLAFITITALILTSTTATLCLLF 884
            ..|.::..|.:|.|..|.:....|:..:..|.::.:...:...|.:.|.:..||..|||..||:|
 Frog   240 GLTNNISSPPVNQSLAIMIGNGLVMAGTGAVFLVTHFFHDWSNLVYATTSGSILVCTTAINCLIF 304

  Fly   885 IPKLHDIWARNDIIDPVIHS-MGLKMECNTRRFVVDDRRELQYRVEVQNRVYKKEIQALDAEIRK 948
            ||:|  :.:|....:.|..: |.......::.|......|..|.:..:|...:|.:...:|.|..
 Frog   305 IPQL--LQSRQFEEEQVQSTQMSKYFSSPSKSFRSMYSEEQIYHLLGENTSMRKLLSEKNAIIES 367

  Fly   949 LERLLESGLTTTSTTTSSSTSLLTGGGHLKPELTVTSGISQTPAASKNRTPSISGILPNLLLSVL 1013
            |:..:.:..........|..|..|      .|:|..|.:|.:..|.::.      :.|..:.::.
 Frog   368 LQEQVSNAKEKLMKLIKSECSFET------IEVTSLSVLSASTLAIQHH------VAPEHMKTIE 420

  Fly  1014 PPVIPRASWPSAEYMQIPMRRSVTFASQPQLEEACLPAQDLINLRLAHQQATEAKTGLINRLRGI 1078
            .|:   .|..:|::..:...............:|....:|. |::.:.::..|.           
 Frog   421 EPL---DSVENADHEAVIKDTQEVDIKHDTKSDAFQSPKDQ-NIQESEEKPQEG----------- 470

  Fly  1079 FSRTTSSNKGSTASLADQKGLKAAFKSHMGLFTRLIPSSQTASCNAIYNNPNQDSIPSEASSHPN 1143
               :..:||.|..|::.|:.:..:             .|::.|...|.:..:... |.|||..  
 Frog   471 ---SQCTNKPSGCSVSKQEDMSTS-------------DSRSVSFADIVSKSHHQH-PGEASER-- 516

  Fly  1144 GNHLKPIHRGSLTKSGTH--LDHLTKDPNFLPIPTISG--GEQGDQTLGGKYVKLLETKVNFQLP 1204
                            ||  |:.|::..|::....:..  .|...:|..|.:....:.:.:..: 
 Frog   517 ----------------THDVLEQLSRKINYVSSEKLQEILQELSIETTCGHHSPKRQRRASHSV- 564

  Fly  1205 SNRRPSVVQQ----------PPSLRERVRG----------SPRFPHRILPPT-CSLSALAES--- 1245
             ||.|.:|..          .|.:..|.||          |..||:.:.|.| |.|:..|.:   
 Frog   565 -NRDPGLVPSEGFRKMCVSLSPYMMRRRRGPVYSQRNQHPSHHFPNALPPQTWCLLNKEARNRCN 628

  Fly  1246 ------EDRP 1249
                  ::||
 Frog   629 GVKTTRDERP 638

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GABA-B-R3NP_523447.2 PBP1_GABAb_receptor 156..600 CDD:380589
7tmC_GABA-B-like 621..892 CDD:320175 83/266 (31%)
TM helix 1 621..645 CDD:320175 6/16 (38%)
TM helix 2 657..678 CDD:320175 6/20 (30%)
TM helix 3 696..720 CDD:320175 8/23 (35%)
TM helix 4 741..761 CDD:320175 10/19 (53%)
TM helix 5 797..823 CDD:320175 8/25 (32%)
TM helix 6 832..855 CDD:320175 4/22 (18%)
TM helix 7 862..887 CDD:320175 11/24 (46%)
gpr156XP_004919836.1 7tmC_GPR156 71..313 CDD:320419 76/252 (30%)
TM helix 2 83..104 CDD:320419 6/20 (30%)
TM helix 3 117..141 CDD:320419 8/23 (35%)
TM helix 4 161..181 CDD:320419 10/19 (53%)
TM helix 5 217..243 CDD:320419 8/25 (32%)
TM helix 6 252..275 CDD:320419 4/22 (18%)
TM helix 7 282..307 CDD:320419 11/24 (46%)
Blue background indicates that the domain is not in the aligned region.

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