DRSC/TRiP Functional Genomics Resources

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Protein Alignment GABA-B-R3 and LOC100498444

DIOPT Version :10

Sequence 1:NP_523447.2 Gene:GABA-B-R3 / 33248 FlyBaseID:FBgn0031275 Length:1305 Species:Drosophila melanogaster
Sequence 2:XP_031751053.1 Gene:LOC100498444 / 100498444 XenbaseID:XB-GENE-29084235 Length:1008 Species:Xenopus tropicalis


Alignment Length:616 Identity:99/616 - (16%)
Similarity:191/616 - (31%) Gaps:251/616 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 TGGTGFIG--KVLVEKLLRCFEVKKIFLLIRRKANVSATDRLQQMLEGPLFDRVRNETKAAKALF 78
            :||:...|  :..:|..|:.|.:.|:....:|..:....|.|::          :.:.|||..::
 Frog     6 SGGSQRAGQKQSFLESKLKSFSIGKMSAAAKRTLSKKEQDELKK----------KEDEKAAAEIY 60

  Fly    79 DK---------------------IEAVEVNFERDD------------------------------ 92
            ::                     :.|.:...|.|:                              
 Frog    61 EEFLAAFEGGDASKVKTFVRGGIVNATKEEHEADEKRGKLYKPSSRFSEPKSQQSSNERPPPPII 125

  Fly    93 LG------LEPALRDRLRQEVEVAFNLLASVNFNEALDQALE-------------------TNVE 132
            ||      |:...:::.:..:|:         |.|.|.|..|                   |:.:
 Frog   126 LGEPKKPPLKKGEKEKKKSNLEL---------FKEELKQIQEERDERHKTKGRTSRFEPPQTDTD 181

  Fly   133 CTRRVLNLLSGARRIKSVIH--------------VSTFYSNCNRTLIEEKIYDDIG-FGGYDNIK 182
            ..||:::..|..|...|.:.              .:.:..|.|..:.||.:..:.| ||...::|
 Frog   182 TQRRLMDTPSSRRSRSSALDDYAPGSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVK 246

  Fly   183 STFAKLQDDHKQ-----FLSPVVLGTFPNSYTFSKKCAEVVVRDKFGHL---------------- 226
            ..:.:..::..:     |::      |.|     ::.||..:::..|.:                
 Frog   247 IMWPRTDEERARERNCGFVA------FMN-----RRDAERALKNLNGKMVMNFEMKLGWGKAVPI 300

  Fly   227 -PVGIFRPPIVTSSYREPVPGWV-------DNFNGPSGMVVPLSQGLYSAALLDPKKK------- 276
             |..|:.||.:......|.|..:       :....|:..::||           ||.|       
 Frog   301 PPHPIYIPPSMMEHTLPPPPSGLPFNAQPRERLKNPNAPMMPL-----------PKNKEEFEKTL 354

  Fly   277 -----PFIVPVDFCVNALLVCAHDVSKSSVTK-------------SIPVYNYTDDCN-----LWT 318
                 ..::|.:   ..||...|.:.:..|.:             :.|::.:..:..     .:.
 Frog   355 SQAIVKVVIPTE---RNLLALIHRMIEFVVREGPMFEAMIMNREINNPMFRFLFENQAPAHVYYR 416

  Fly   319 WDQVINGFFSGLGPIR------KLMKRN---RPPLSQHTNLPITP-LAGRRHHHLRDHPIEFSSR 373
            |.  :.....|..|.:      ::.|..   |||       |:.| |.|.......:..:|...:
 Frog   417 WK--LYSILQGDSPTKWRTEDFRMFKNGSFWRPP-------PLNPYLHGMAEEQEAEPFVEEPIK 472

  Fly   374 MG--KEEFVMQRLFSKMVTLSEVLR-------------FFCLNDWKMTNDNIRRISDEMS----P 419
            .|  |||   ||     ..|.|:||             .||||..:...:.:..|::.:|    |
 Frog   473 KGSLKEE---QR-----DKLEEILRGLTPRKNDIGEAMMFCLNHAEAAEEIVDCITESLSILKTP 529

  Fly   420 LEAEMFPL----DI-----RKIDWTEYYRNF 441
            |..::..|    |:     .|:....|||.:
 Frog   530 LPKKIARLYLVSDVLYNSSAKVANASYYRKY 560

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GABA-B-R3NP_523447.2 PBP1_GABAb_receptor 156..600 CDD:380589 68/384 (18%)
7tmC_GABA-B-like 621..892 CDD:320175
TM helix 1 621..645 CDD:320175
TM helix 2 657..678 CDD:320175
TM helix 3 696..720 CDD:320175
TM helix 4 741..761 CDD:320175
TM helix 5 797..823 CDD:320175
TM helix 6 832..855 CDD:320175
TM helix 7 862..887 CDD:320175
LOC100498444XP_031751053.1 Periplasmic_Binding_Protein_type1 34..504 CDD:471960 78/530 (15%)
NCD3G 512..566 CDD:462210 10/49 (20%)
7tmC_V2R_pheromone 592..836 CDD:320410
TM helix 1 592..612 CDD:320410
TM helix 2 624..645 CDD:320410
TM helix 3 654..678 CDD:320410
TM helix 4 702..718 CDD:320410
TM helix 5 744..770 CDD:320410
TM helix 6 778..801 CDD:320410
TM helix 7 806..831 CDD:320410
Blue background indicates that the domain is not in the aligned region.

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