DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ds and Pcdhb4

DIOPT Version :10

Sequence 1:NP_523446.2 Gene:ds / 33245 FlyBaseID:FBgn0284247 Length:3556 Species:Drosophila melanogaster
Sequence 2:NP_444359.3 Gene:Pcdhb4 / 93875 MGIID:2136738 Length:784 Species:Mus musculus


Alignment Length:909 Identity:231/909 - (25%)
Similarity:354/909 - (38%) Gaps:239/909 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 LILLAIVLLGSSQAASHDQERERKLEVFEGVAVDYQIGYIGDFGGIDSGPPYIIVAEA-----GV 119
            |.:|.::.:..|:|..:....|.:        ..|.:..:....||..|.  :...||     |.
Mouse    17 LTMLLLLWVSGSEAIKYSMPEETE--------SGYLVANLAQDLGIRVGE--LAAREARVHHRGN 71

  Fly   120 ETDLAIDRATGEIRTKVKLDRETRASYS---------LVAIPLSGRNIRVLVTVKDENDNAPTFP 175
            :..|.:|..||.:..|.|||||.....:         ::..|:......:.:|  |.||::|.||
Mouse    72 KDLLQLDAETGNLFLKEKLDREGLCGATEPCVLHFQIILKNPVQFFQTELQLT--DINDHSPEFP 134

  Fly   176 QTSMHIEFPENTPREVKRTLLPARDLDLEPYNTQRYNIVSGNVNDAFRLSSHRERDGVLYLDLQI 240
            .|.|.:..||:........|..|:|.|:.....|.|. ||.|::  |.:.:....||..|.:|.:
Mouse   135 DTEMLLTIPESAQPGTVFPLKAAQDPDMGSNAIQNYT-VSPNLH--FHVVTLSRSDGRKYPELVL 196

  Fly   241 SGFLDRETTPGYSLLIEALDGGTPPLRGFMTVNITIQDVNDNQPIFNQSRYFATVPENATVGTSV 305
            ...||||..|..:|::.|||||.|...|..||:|.|.|:|||.|.|.||.|...||||..:...:
Mouse   197 DRALDREEQPELTLILTALDGGAPRRSGMTTVHIEIMDINDNAPQFVQSLYEVQVPENFPLDALL 261

  Fly   306 LQVYASDTDADENGLVEYAINRRQSDKEQMFRIDPRTGAIYINKALDFETKELHELVVVAKDHGE 370
            :.|.|.|.||...|.:.|::.:...| .|.|.||..||.|.::|.||||....:.:.:.|.|.| 
Mouse   262 VTVSARDLDAGIYGNIAYSLFQGDGD-SQPFVIDEITGEIRLSKKLDFEVTPYYNVEIAATDGG- 324

  Fly   371 QPLETTAFVSIRVTDVNDNQPTINVIFLSDDASPKISESAQPGEFVARISVHDPDSKTEYANVNV 435
             .|.....|:::|.|||||.|.:.|..||   || |.|:: |...||...|.||||         
Mouse   325 -GLSGKCTVAVQVLDVNDNAPELTVSTLS---SP-IPENS-PETVVAVFGVFDPDS--------- 374

  Fly   436 TLNGGDGH----------FALTTRDNSIYLVIVHLPLDREIVSNYTLSVVATDKGTPPLHASKSI 490
               |.:|.          |.|.:...:.|.:....|||||.::.|.:::..:|.|||.|....:|
Mouse   375 ---GDNGRMVCSIQNELPFLLKSTFENYYTLATERPLDRESIAEYNITITVSDMGTPRLTTQHTI 436

  Fly   491 FLRITDVNDNPPEFEQDLYHANVMEVADPGTSVLQVLAHDRDEGLNSALTYSLAETPETHAQWFQ 555
            .::::|:|||.|.|.|..|...|.|...|...:..:.|.|.|.|.|:.:||||            
Mouse   437 KVQVSDINDNAPAFTQTSYTLFVHENNSPALHIGTISATDSDSGSNAHITYSL------------ 489

  Fly   556 IDPQTGLITTRSHIDCETEPVPQLTVVARDGGVPPLSSTATVLVTIHDVNDNEPIFDQSFYNVSV 620
                                            :||                              
Mouse   490 --------------------------------LPP------------------------------ 492

  Fly   621 AENEPVGRCILKVSASDPDCGVNAMVNYTIGEGFKHLTEFEVRSASGEICIAGELDFERRSSYEF 685
                           .||...::::::              :.:.:|::.....||:|...::||
Mouse   493 ---------------QDPQLALSSLIS--------------INADNGQLFALRALDYEALQAFEF 528

  Fly   686 PVLATDRG--GLSTTAMIKMQLTDVNDNRP-VFYPRE-----YKVSLRESPKASSQASSTPIVAV 742
            .|.|||.|  .||:..::::.:.|.|||.| |.||.:     |...|   |:|:.....  :..|
Mouse   529 HVGATDGGSPALSSQTLVRVVVLDDNDNAPFVLYPLQNASAPYTELL---PRAAEPGYL--VTKV 588

  Fly   743 VATDPDYGNFGQVSYRIVAGNEAGIFRIDRSTGEIFVVRPDMLSVRTQPMHMLNISATDGGNLRS 807
            ||.|.|.|....:|::::...|.|:|.:....||:...|  :||.|..|.|.|.:...|.|....
Mouse   589 VAVDRDSGQNAWLSFQLLKATEPGLFSVWAHNGEVRTTR--LLSERDAPKHRLLLLVKDNGEPLR 651

  Fly   808 NADAVVFLSIIDAMQRP----------PIFEKARYNYYV-------------------------- 836
            :|...:.:.::|...:|          |..|:.....|:                          
Mouse   652 SASVTMHVLVVDGFSQPYLPLPEVALDPTREEDNLTLYLVISLASVSSLFLLSVLLFMGARLCRR 716

  Fly   837 -KE------DIPRGTVVGSVIAASGDVAHRSPVRYSI-YSGD------------------PDGY 874
             :|      .:|.|...|.::..||........:|.: .|||                  ||.|
Mouse   717 AREASLGGYSVPEGHFPGHLVDVSGAGTLSQSYQYEVCLSGDSGITDFKFLKPSNPNSLIPDNY 780

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dsNP_523446.2 CA 111..172 CDD:214520 18/74 (24%)
Cadherin_repeat 178..282 CDD:206637 36/103 (35%)
Cadherin_repeat 291..389 CDD:206637 34/97 (35%)
Cadherin_repeat 406..500 CDD:206637 29/103 (28%)
Cadherin_repeat 509..607 CDD:206637 15/97 (15%)
Cadherin_repeat 616..711 CDD:206637 17/96 (18%)
Cadherin_repeat 719..820 CDD:206637 26/105 (25%)
Cadherin_repeat 832..927 CDD:206637 14/95 (15%)
Cadherin_repeat 937..1032 CDD:206637
Cadherin_repeat 1040..1149 CDD:206637
Cadherin_repeat 1158..1252 CDD:206637
Cadherin_repeat 1263..1361 CDD:206637
Cadherin_repeat 1369..1481 CDD:206637
Cadherin_repeat 1489..1598 CDD:206637
Cadherin_repeat 1614..1710 CDD:206637
Cadherin_repeat 1723..1843 CDD:206637
Cadherin_repeat 1853..1948 CDD:206637
Cadherin_repeat 1957..2053 CDD:206637
Cadherin_repeat 2061..2154 CDD:206637
CA_like 2171..>2232 CDD:481204
Cadherin_repeat 2326..2424 CDD:206637
Cadherin_repeat 2434..2528 CDD:206637
Cadherin_repeat 2549..2641 CDD:206637
Cadherin_repeat 2652..2748 CDD:206637
Cadherin_repeat 2758..2858 CDD:206637
Cadherin_repeat 2866..2960 CDD:206637
Cadherin_repeat 2985..3071 CDD:206637
Pcdhb4NP_444359.3 Cadherin_2 30..112 CDD:462413 19/91 (21%)
Cadherin_repeat 140..238 CDD:206637 35/100 (35%)
Cadherin_repeat 247..342 CDD:206637 34/97 (35%)
Cadherin_repeat 355..446 CDD:206637 29/103 (28%)
Cadherin_repeat 454..556 CDD:206637 32/204 (16%)
Cadherin_repeat 570..663 CDD:206637 26/99 (26%)
Cadherin_C_2 685..768 CDD:465139 11/82 (13%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.