DRSC/TRiP Functional Genomics Resources

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Protein Alignment ds and Pcdhb3

DIOPT Version :10

Sequence 1:NP_523446.2 Gene:ds / 33245 FlyBaseID:FBgn0284247 Length:3556 Species:Drosophila melanogaster
Sequence 2:NP_444358.2 Gene:Pcdhb3 / 93874 MGIID:2136737 Length:784 Species:Mus musculus


Alignment Length:903 Identity:236/903 - (26%)
Similarity:372/903 - (41%) Gaps:203/903 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   678 ERRSSYEFPVLATDRGGLSTTAMIKMQLTDVNDNRPVFYPREYKVSLRESPKASSQASSTPIVAV 742
            |:...:....||||.|                            :|:.|..:..:||.|.     
Mouse    38 EKEKGFVIANLATDLG----------------------------LSIEELAERRAQAISK----- 69

  Fly   743 VATDPDYGNFGQVSYRIVAGNEAGIFRIDRSTGEIFVV----RPDMLSVRTQP--MHMLNISATD 801
                      |.:.|          |::...||::.:|    |.|:.. .|:|  :| ..|...|
Mouse    70 ----------GNIQY----------FQLSHQTGDLLLVEKLDREDLCG-STEPCVLH-FQILLHD 112

  Fly   802 GGNLRSNADAVVFLSIIDAMQR-PPIFEKARYNYYVKEDIPRGTVVGSVIAASGDVAHRSPVRYS 865
            .....:|.     |.:||.... |..||.|.....::..:| |||:....|...||.......|:
Mouse   113 PLQFITNE-----LEVIDVNDHAPEFFENAMQLKVLENSVP-GTVIPLGNAVDLDVGRNGLQNYT 171

  Fly   866 IYSGDPDGYFSIETNS-------GNIRIAKPLDHEAKSQVLLNIQA-TLGEPPVYGHTQVNIEVE 922
            :   .|..:|.:.|..       ..:.:.:.||.|.:|::.|.:.| ..|.||..|.|||:|.|.
Mouse   172 V---SPTSHFHVHTRRRRDGRKYPELVLDRALDREEQSEISLTLTALDGGSPPRSGTTQVHILVL 233

  Fly   923 DVNDNAPEFEASMVRISVPESAELGAPLYAAHAHDKDSGSSGQVTYSLVKESGKGL--FAIDARS 985
            |.|||||||..|:..:.:.|.:.:|:.:....|.|.|:|:.|.::|.....|.:.|  |.:::.:
Mouse   234 DTNDNAPEFTQSLYEVQILEKSPIGSVITTVSASDLDTGNFGAISYVFFHASEEILETFRLNSST 298

  Fly   986 GHLILSQHLDYESSQRHTLIVTATDGGVPSLSTNLTILVDVQDVNDNPPVFEKDEYSVN-VSESR 1049
            |::.|.:.||||:...:.:.:.|.|||  .||...|::|.:.|||||||  |....||| :....
Mouse   299 GNIQLLKGLDYEAINTYEVDIEAKDGG--GLSGKCTVIVQILDVNDNPP--ELTLSSVNSLIPEN 359

  Fly  1050 SINAQIIQVNASDLDTGNNARITYRIVDAGVDNVTNSISSSDVSQHFGIFPNSGWIYLRAPLDRE 1114
            |....:...:.||||:|:|.|:|     ..:.|....|....|...:.|  .|.|     .||||
Mouse   360 SAETVVAVFSVSDLDSGDNGRVT-----CSIQNDLPFILKPSVENFYTI--ASEW-----ALDRE 412

  Fly  1115 TRDRYQLTVLATDNGTPAAHAKTRVIVRVLDANDNDPKFQKSKYEFRIEENLRRGSVVGVVTASD 1179
            .|..|.:|:..:|.|||....:..:.|:|.|.|||.|.|.::.|...:.||......:|.::|:|
Mouse   413 IRAEYNITITVSDLGTPRLTTQHTITVQVSDLNDNAPAFTQTSYTMSVRENNSPALHIGTISATD 477

  Fly  1180 LDLGENAAIRYSLLP-------INSSFQVHPVTGEISTREPLDRELRELYDLVVEARDQGTPVRS 1237
            .|.|.||.|.|||||       ::|...::...|::.....||.|..:.::..|.|.|.|:|..|
Mouse   478 SDSGSNAHITYSLLPPHDPQLALDSLISINADNGQLFALRALDYEALQAFEFHVGATDGGSPALS 542

  Fly  1238 ARVPVRIHVSDVNDNAPEIADPQEDVVSVREEQPP-----GTEVVRVRAVDRDHGQNASITYSIV 1297
            ::..||:.|.|.|||||.:..|.::..:...|..|     |..|.:|.|||||.||||.:::.::
Mouse   543 SQALVRVVVLDDNDNAPFVLYPLQNASAPCTELLPRAAETGYLVTKVVAVDRDSGQNAWLSFQLL 607

  Fly  1298 KGRDSDGHGLFSIDPTSGVIRTRVVLDHEERSIYRLGVAASDGGNPPRETVRMLRVEVLDLNDNR 1362
            |..:.   ||||:...:|.:||..:|...:....:|.:...|.|:|||.....|.|.::|     
Mouse   608 KSTEP---GLFSVWAHNGEVRTARLLSERDMLKQKLLLLVKDNGDPPRSASVTLNVLLVD----- 664

  Fly  1363 PTFTSSSLVFRVREDAALGHVVGSISPIERPADVVRNSVEESFEDLRVTYTLNPLTKDLIEAAFD 1427
                                  |...|.....:|.|:||:.                       |
Mouse   665 ----------------------GFSQPYLPLPEVARDSVQN-----------------------D 684

  Fly  1428 IDRHSGNLVVARLLDREVQSEFRLEI------------RALDTTASNNPQSSAITVKIEVADVND 1480
            :|..:..||:|.   ..|.|.|.|.:            ||......:.|:.              
Mouse   685 VDLLTLYLVIAL---ASVSSLFLLSVLLFVGVRLCRRARAASMGGCSVPEG-------------- 732

  Fly  1481 NAPEWPQDPIDLQVSEATPVGTIIHNFTATDADTGTNGDLQYRLIR-YFPQ--LNESQ 1535
               .:|...:|:     :.:||:..::......||..|..:::|:. ..|.  |.||:
Mouse   733 ---HFPGHLVDV-----SGMGTLSQSYQYEVCLTGDAGTGEFKLLNPVIPNLFLEESE 782

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dsNP_523446.2 CA 111..172 CDD:214520
Cadherin_repeat 178..282 CDD:206637
Cadherin_repeat 291..389 CDD:206637
Cadherin_repeat 406..500 CDD:206637
Cadherin_repeat 509..607 CDD:206637
Cadherin_repeat 616..711 CDD:206637 6/32 (19%)
Cadherin_repeat 719..820 CDD:206637 21/106 (20%)
Cadherin_repeat 832..927 CDD:206637 28/102 (27%)
Cadherin_repeat 937..1032 CDD:206637 28/96 (29%)
Cadherin_repeat 1040..1149 CDD:206637 33/109 (30%)
Cadherin_repeat 1158..1252 CDD:206637 32/100 (32%)
Cadherin_repeat 1263..1361 CDD:206637 32/102 (31%)
Cadherin_repeat 1369..1481 CDD:206637 18/123 (15%)
Cadherin_repeat 1489..1598 CDD:206637 11/50 (22%)
Cadherin_repeat 1614..1710 CDD:206637
Cadherin_repeat 1723..1843 CDD:206637
Cadherin_repeat 1853..1948 CDD:206637
Cadherin_repeat 1957..2053 CDD:206637
Cadherin_repeat 2061..2154 CDD:206637
CA_like 2171..>2232 CDD:481204
Cadherin_repeat 2326..2424 CDD:206637
Cadherin_repeat 2434..2528 CDD:206637
Cadherin_repeat 2549..2641 CDD:206637
Cadherin_repeat 2652..2748 CDD:206637
Cadherin_repeat 2758..2858 CDD:206637
Cadherin_repeat 2866..2960 CDD:206637
Cadherin_repeat 2985..3071 CDD:206637
Pcdhb3NP_444358.2 Cadherin_2 30..112 CDD:462413 23/128 (18%)
Cadherin_repeat 139..238 CDD:206637 28/102 (27%)
Cadherin_repeat 247..343 CDD:206637 28/97 (29%)
Cadherin_repeat 356..447 CDD:206637 30/102 (29%)
Cadherin_repeat 455..557 CDD:206637 32/101 (32%)
Cadherin_repeat 576..664 CDD:206637 30/90 (33%)
Cadherin_C_2 688..770 CDD:465139 18/106 (17%)
Blue background indicates that the domain is not in the aligned region.

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