DRSC/TRiP Functional Genomics Resources

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Protein Alignment ds and Pcdhb2

DIOPT Version :10

Sequence 1:NP_523446.2 Gene:ds / 33245 FlyBaseID:FBgn0284247 Length:3556 Species:Drosophila melanogaster
Sequence 2:NP_444357.1 Gene:Pcdhb2 / 93873 MGIID:2136735 Length:799 Species:Mus musculus


Alignment Length:808 Identity:212/808 - (26%)
Similarity:345/808 - (42%) Gaps:180/808 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 ILLAIVLLGSSQAASHDQERERKLEVFEGVAVDYQIGYIG-DFGGIDSGPPYIIVAEAGVETDLA 124
            :||..||||.:||.|..:....:.|...||.|...:..:| :...:.:..|.:|  ..|.:.:|.
Mouse    16 VLLFFVLLGIAQAGSTIRRYSVEEEAENGVFVANLLKDLGLEVEELAARGPRVI--SKGKKLNLE 78

  Fly   125 IDRATGEIRTKVKLDRETRAS-YSLVAIP---LSGRNIRVL---VTVKDENDNAPTFPQTSMHIE 182
            .:|.||::..:.|||||.... .....:|   |.|..:::.   :.::|.||::|.|....:.::
Mouse    79 FNRQTGDLLLREKLDREELCGPAEPCVVPFQVLLGNPLQIFQAELQIRDINDHSPVFLDKEITLK 143

  Fly   183 FPENTPREVKRTLLPARDLDLEPYNTQRYNIVSGNVNDAFRLSSHRERDGVLYLDLQISGFLDRE 247
            ..|:|.......:..|:|||:.....|.|.|   |.|..|.|:.....||.:...|.:...||||
Mouse   144 ISESTASGTTFLIERAQDLDVGSNGLQTYTI---NPNFYFHLNLQNSPDGTVLPQLVLDKVLDRE 205

  Fly   248 TTPGYSLLIEALDGGTPPLRGFMTVNITIQDVNDNQPIFNQSRYFATVPENATVGTSVLQVYASD 312
            ......|::.|||||.||..|.:.:.|.:.|:|||.|:|::.||...:|||:.||:.|..|.|.|
Mouse   206 ERSEIRLILTALDGGNPPRSGTVQILIEVLDINDNAPVFSKLRYEVQIPENSPVGSQVATVSARD 270

  Fly   313 TDADENGLVEYAINRRQSDKEQMFRIDPRTGAIYINKALDFETKELHELVVVAKDHGEQPLETTA 377
            .|..::|.:.||.::...|..:.||::..:|.|.:.|.||||:.:.:.:.|.|.|.|  .|..::
Mouse   271 LDIGDHGNIAYAFSQASEDIRKTFRMNATSGEILLVKTLDFESIQAYTICVQATDGG--GLSGSS 333

  Fly   378 FVSIRVTDVNDNQPTINVIFLSDDASPKISESAQPGEFVARISVHDPDSKTEYANVNVTLNGGDG 442
            .|.::|.|:|||.|.:.:...::    .|.|:| |...:|..||.|.||            |.:|
Mouse   334 VVIVQVMDLNDNPPELTMSTFTN----HIPENA-PETVIAVFSVADSDS------------GDNG 381

  Fly   443 H----------FALTTRDNSIYLVIVHLPLDREIVSNYTLSVVATDKGTPPLHASKSIFLRITDV 497
            .          |.|.....:.|.::.:..||||..|.|.::::.:|.|||.|.|..:|.::::|:
Mouse   382 KMVCSIQEDLPFILKPSFENFYTLMTNTALDRETRSQYNITIMVSDLGTPRLTAQHTIIVQVSDI 446

  Fly   498 NDNPPEFEQDLYHANVMEVADPGTSVLQVLAHDRDEGLNSALTYSLAETPETHAQWFQIDPQTGL 562
            |||.|.|.|..|...|.|...|...:..:.|.|.|.|.|:.:||||                   
Mouse   447 NDNAPAFTQTSYTIFVRENNSPALHIGTISATDSDSGSNAHITYSL------------------- 492

  Fly   563 ITTRSHIDCETEPVPQLTVVARDGGVPPLSSTATVLVTIHDVNDNEPIFDQSFYNVSVAENEPVG 627
                                     :||                                     
Mouse   493 -------------------------LPP------------------------------------- 495

  Fly   628 RCILKVSASDPDCGVNAMVNYTIGEGFKHLTEFEVRSASGEICIAGELDFERRSSYEFPVLATDR 692
                    .||...::::|:              :.:.:|::.....||:|.:.:::|.|.|||.
Mouse   496 --------QDPQLALHSLVS--------------INADNGQLFALRALDYEDQQTFKFHVGATDG 538

  Fly   693 G--GLSTTAMIKMQLTDVNDNRP-VFYPREYKVSLRESPKASSQASSTP--------------IV 740
            |  .||:..::::.:.|.|||.| |.||              .|.||.|              :.
Mouse   539 GSPALSSQTLVRVVVLDDNDNAPFVLYP--------------LQNSSVPCTELLPRAAEPGYLVT 589

  Fly   741 AVVATDPDYGNFGQVSYRIVAGNEAGIFRIDRSTGEIFVVRPDMLSVRTQPMHMLNISATDGGNL 805
            .|||.|.|.|....:|::::...|.|:|.:....||:...|  :||.|..|.|.|.:...|.|:.
Mouse   590 KVVAVDRDSGQNAWLSFQLLKATEPGLFSVWAHNGEVRTTR--LLSERDAPKHRLLLLVKDNGDP 652

  Fly   806 RSNADAVVFLSIIDAMQRP--PIFEKAR 831
            ..:|...:.:.::|...:|  |:.|.||
Mouse   653 PHSASVTLQVLVVDGFSQPYLPLPEVAR 680

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dsNP_523446.2 CA 111..172 CDD:214520 17/67 (25%)
Cadherin_repeat 178..282 CDD:206637 32/103 (31%)
Cadherin_repeat 291..389 CDD:206637 33/97 (34%)
Cadherin_repeat 406..500 CDD:206637 30/103 (29%)
Cadherin_repeat 509..607 CDD:206637 15/97 (15%)
Cadherin_repeat 616..711 CDD:206637 17/96 (18%)
Cadherin_repeat 719..820 CDD:206637 26/114 (23%)
Cadherin_repeat 832..927 CDD:206637 212/808 (26%)
Cadherin_repeat 937..1032 CDD:206637
Cadherin_repeat 1040..1149 CDD:206637
Cadherin_repeat 1158..1252 CDD:206637
Cadherin_repeat 1263..1361 CDD:206637
Cadherin_repeat 1369..1481 CDD:206637
Cadherin_repeat 1489..1598 CDD:206637
Cadherin_repeat 1614..1710 CDD:206637
Cadherin_repeat 1723..1843 CDD:206637
Cadherin_repeat 1853..1948 CDD:206637
Cadherin_repeat 1957..2053 CDD:206637
Cadherin_repeat 2061..2154 CDD:206637
CA_like 2171..>2232 CDD:481204
Cadherin_repeat 2326..2424 CDD:206637
Cadherin_repeat 2434..2528 CDD:206637
Cadherin_repeat 2549..2641 CDD:206637
Cadherin_repeat 2652..2748 CDD:206637
Cadherin_repeat 2758..2858 CDD:206637
Cadherin_repeat 2866..2960 CDD:206637
Cadherin_repeat 2985..3071 CDD:206637
Pcdhb2NP_444357.1 Cadherin_2 33..114 CDD:462413 19/82 (23%)
Cadherin_repeat 139..240 CDD:206637 32/103 (31%)
Cadherin_repeat 249..345 CDD:206637 33/97 (34%)
Cadherin_repeat 357..449 CDD:206637 30/104 (29%)
Cadherin_repeat 457..559 CDD:206637 32/204 (16%)
Cadherin_repeat 578..666 CDD:206637 22/89 (25%)
Cadherin_C_2 689..771 CDD:465139
Blue background indicates that the domain is not in the aligned region.

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