DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ds and Pcdh1

DIOPT Version :10

Sequence 1:NP_523446.2 Gene:ds / 33245 FlyBaseID:FBgn0284247 Length:3556 Species:Drosophila melanogaster
Sequence 2:XP_038953281.1 Gene:Pcdh1 / 307481 RGDID:1308490 Length:1231 Species:Rattus norvegicus


Alignment Length:1287 Identity:351/1287 - (27%)
Similarity:526/1287 - (40%) Gaps:258/1287 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 RRRSNIKSLYSPPALHPSHMLRSS--------LL--ILLAIVLLGSSQAASHD-------QERER 82
            |||..:..:..|..:.|   ||.|        ||  :|||::|| .:.:|||.       .|.:.
  Rat     2 RRRKTVLLILEPARMGP---LRPSPGPGGQRLLLPPLLLALLLL-LAPSASHTTQVVYKVPEEQP 62

  Fly    83 KLEVFEGVAVDYQIGYIGDFGGIDSGPPYIIVAEAGVETDLAIDRATGEI-RTKVKLDRE----- 141
            ...:...:|.||.:..:|....::.|.||           |.:|..||:| .|:..:|||     
  Rat    63 PNTLIGSLAADYGLPDVGHLYKLEVGAPY-----------LRVDGKTGDIFTTETSIDREGLREC 116

  Fly   142 ----------TRASYSLVAIPLSG--RNIRVLVTVKDENDNAPTFPQTSMHIEFPENTPREVKRT 194
                      .....|:..:..:|  |.:...:.|:|.|||.|.|....:.:..||||.   ..:
  Rat   117 QNQISGSPCILEFEVSITDLVQNGSPRLLEGQIEVQDINDNTPNFASPVITLAIPENTN---IGS 178

  Fly   195 LLP---ARDLDLEPYNTQRYNIVSG-NVNDAFRLSSHRERDGVLYLDLQISGFLDRETTPGYSLL 255
            |.|   |.|.|..|.....|.:.:| ...:.|.|....::: .....|.:.|.||||....|.|.
  Rat   179 LFPIPLATDRDAGPNGVASYELQAGPEAQELFGLQVAEDQE-EKQPQLIVMGNLDRERWDSYDLT 242

  Fly   256 IEALDGGTPPLRGFMTVNITIQDVNDNQPIFNQSRYFATVPENATVGTSVLQVYASDTDADENGL 320
            |:..|||:||......:.:|:.|.|||.|.|.:..|.|.:.||:.:|.||:||.|:|:|...|..
  Rat   243 IKVQDGGSPPRASSALLRVTVLDTNDNAPKFERPTYEAELSENSPIGHSVIQVKANDSDQGANAE 307

  Fly   321 VEYAINRRQSDKEQMFRIDPRTGAIYINKALDFETKELHELVVVAKDHGEQPLETTAFVSIRVTD 385
            ::|..::......::.|:|..||.|.:...:|.|........|:|||.|..|....|.|.:.|.|
  Rat   308 IDYTFHQAPEVVRRLLRLDRNTGLITVQGPVDREDLSTLRFSVLAKDRGANPKSARAQVVVTVKD 372

  Fly   386 VNDNQPTINV----IFLSDDASPKISESAQPGEFVARISVHDPDSKTEYANVNVT-LNGGDGHFA 445
            :|||.|||.:    :....|....|||.......||.:.|.|.|   |..|..|| :..||..|.
  Rat   373 MNDNAPTIEIRGIGLVTHQDGMANISEDVAEETAVALVQVSDRD---EGENAAVTCVVAGDVPFQ 434

  Fly   446 L-----TTRDN-SIYLVIVHLPLDREIVSNYTLSVVATDKGTPPLHASKSIFLRITDVNDNPPEF 504
            |     |..|: ..|.:....|||.|.|.:||:.:||.|.|.|||.::.|:.:::.|||||.|.|
  Rat   435 LRQASETGSDSKKKYFLQTTTPLDYEKVKDYTIEIVAVDSGNPPLSSTNSLRVQVVDVNDNAPVF 499

  Fly   505 EQDLYHANVMEVADPGTSVLQVLAHDRDEGLNSALTYSLAETPETHAQ-WFQIDPQTGLITTRSH 568
            .|.:......|...||..|.:|.|.|.|.|.|:.|.|||  .||..|| .|.|.|:.|.:..::.
  Rat   500 TQSITEVAFPENNKPGEVVAEVTASDADSGSNAELVYSL--EPEPAAQGLFTISPENGEVRVKTS 562

  Fly   569 IDCETEPVPQLTVVARDGGVPPLSSTATVLVTIHDVNDNEPIFDQSFYNVSVAENEPVGRCILKV 633
            :|.|.....:|.|||.|.|.|.|..||||||.:.|.|||:|.|..|.||.||.||.|....:..|
  Rat   563 LDREQRDSYELKVVAADRGSPSLQGTATVLVNVLDCNDNDPKFMLSGYNFSVMENMPALSPVGMV 627

  Fly   634 SASDPDCGVNAMVNYTIGE--GFKHLTEFEVRSASGEICIAGELDFERRSSYEFPVLATDRGGL- 695
            :..|.|.|.||.|..::.:  |     :|.:::.:|.|..:...|.|::|:|.|.:.|.| ||: 
  Rat   628 TVIDGDKGENARVQLSVEQDNG-----DFVIQNGTGTILSSLSFDREQQSTYTFQLKAVD-GGVP 686

  Fly   696 --STTAMIKMQLTDVNDNRPVFYPREYKVSLRESPKASSQASSTP-------IVAVVATDPDYGN 751
              |....:.:.:.|.|||.|..          .:|..:|....||       :..|.|.|.|.|.
  Rat   687 PRSAYVGVTINVLDENDNAPFI----------TAPSNTSHRLLTPQTRLGETVSQVTAEDIDSGI 741

  Fly   752 FGQVSYRIVAGNEAGIFRIDRSTGEIFVVRPDMLSVRTQPMHMLNISATDGGNLRSNADAVVFLS 816
            ..:::|.|..||..|:|:|...:|.|.:.:.  :..|...:|.|.:..:|.|             
  Rat   742 NAELTYSIAGGNPYGLFQIGSHSGAITLEKE--IERRHHGLHRLVVKVSDRG------------- 791

  Fly   817 IIDAMQRPPIFEKARYNYYVKEDIPRGTVVGSVIAASGDVAHRSPVRYSIYSGDPDGYFSIETNS 881
                  :||.:..|..:.||.|.:...|::.:::..|.|    :|:...| :|||:  :......
  Rat   792 ------KPPRYGTALVHLYVNETLANRTLLETLLVHSLD----TPLDIDI-AGDPE--YERSKQR 843

  Fly   882 GNIR-------IAKPL------------DHEAKSQVLLNIQATLGEPPVYGHTQVNIEVEDVNDN 927
            |||.       :|..|            ..||||                |:.....|.:|:...
  Rat   844 GNILFGVVAGVVAVALLIALAVLVRYCRQREAKS----------------GYQAGKKETKDLYAP 892

  Fly   928 APEFEASMVRISVPESAELGAPLYAAHAHDKDSGSSGQVTYSLVKESGKGLFAIDARSGHLILSQ 992
            .|..:|:....|..:.::...|:......| |:|....:.::|:.::..     |:...||    
  Rat   893 KPSGKAAKGSKSKGKKSKSPKPVKPVEDED-DTGLQKSLKFNLMSDAPG-----DSPRIHL---- 947

  Fly   993 HLDYESSQRHTLIVTATDGGVPSLSTNLTILVDVQDVNDNPPVFEKDEYSVNV---SESRSINAQ 1054
            .|:|..             |.|.|.         :....|.|:     .|:.:   |.|.|...|
  Rat   948 PLNYPP-------------GSPDLG---------RHYRSNSPL-----PSIQLQPQSPSASKKHQ 985

  Fly  1055 IIQVNASDLDTGNNARITYRIVDAGVDNVTNSISSSDVSQHFGIFPNSGWIYLRAPLDRETRDRY 1119
            ::|    ||...|.      .|..|....|.|...||.|.                  |....:|
  Rat   986 VVQ----DLPPANT------FVGTGDTTSTGSEQYSDYSY------------------RTNPPKY 1022

  Fly  1120 QLTVLATDNGTPAAHAKTRVIVRVLDANDNDPKFQKSKYEFRIEENLRRGSVVGVVTASDLDLGE 1184
            ....|.....|.:|.::.:.:        .||. |.|.|:..:||:....|    .::|...||.
  Rat  1023 PSKQLPHRRVTFSATSQAQEL--------QDPS-QHSYYDSGLEESETPSS----KSSSGPRLGP 1074

  Fly  1185 NAAIRYSLLPINSSFQVHPVTGEISTREPLDRELRELYDLVVEARDQGTPVR 1236
            .|      ||.:...:..| .|.|...|..:.:||.|.|:.:    .||..|
  Rat  1075 LA------LPEDHYERTTP-DGSIGEMEHPENDLRPLPDVAM----TGTCTR 1115

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dsNP_523446.2 CA 111..172 CDD:214520 18/78 (23%)
Cadherin_repeat 178..282 CDD:206637 31/107 (29%)
Cadherin_repeat 291..389 CDD:206637 32/97 (33%)
Cadherin_repeat 406..500 CDD:206637 37/100 (37%)
Cadherin_repeat 509..607 CDD:206637 40/98 (41%)
Cadherin_repeat 616..711 CDD:206637 30/99 (30%)
Cadherin_repeat 719..820 CDD:206637 23/107 (21%)
Cadherin_repeat 832..927 CDD:206637 23/113 (20%)
Cadherin_repeat 937..1032 CDD:206637 14/94 (15%)
Cadherin_repeat 1040..1149 CDD:206637 21/111 (19%)
Cadherin_repeat 1158..1252 CDD:206637 21/79 (27%)
Cadherin_repeat 1263..1361 CDD:206637
Cadherin_repeat 1369..1481 CDD:206637
Cadherin_repeat 1489..1598 CDD:206637
Cadherin_repeat 1614..1710 CDD:206637
Cadherin_repeat 1723..1843 CDD:206637
Cadherin_repeat 1853..1948 CDD:206637
Cadherin_repeat 1957..2053 CDD:206637
Cadherin_repeat 2061..2154 CDD:206637
CA_like 2171..>2232 CDD:481204
Cadherin_repeat 2326..2424 CDD:206637
Cadherin_repeat 2434..2528 CDD:206637
Cadherin_repeat 2549..2641 CDD:206637
Cadherin_repeat 2652..2748 CDD:206637
Cadherin_repeat 2758..2858 CDD:206637
Cadherin_repeat 2866..2960 CDD:206637
Cadherin_repeat 2985..3071 CDD:206637
Pcdh1XP_038953281.1 Cadherin_2 52..131 CDD:462413 17/89 (19%)
Cadherin_repeat 165..269 CDD:206637 31/107 (29%)
Cadherin_repeat 277..376 CDD:206637 32/98 (33%)
Cadherin_repeat 395..495 CDD:206637 37/102 (36%)
Cadherin_repeat 505..601 CDD:206637 40/97 (41%)
Cadherin_repeat 610..704 CDD:206637 30/99 (30%)
Cadherin_repeat 723..805 CDD:206637 22/102 (22%)
Protocadherin 808..1022 CDD:462451 55/301 (18%)
Blue background indicates that the domain is not in the aligned region.

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