DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gsc and Poxn

DIOPT Version :10

Sequence 1:NP_001137762.2 Gene:Gsc / 33240 FlyBaseID:FBgn0010323 Length:473 Species:Drosophila melanogaster
Sequence 2:NP_476686.1 Gene:Poxn / 36741 FlyBaseID:FBgn0003130 Length:425 Species:Drosophila melanogaster


Alignment Length:226 Identity:48/226 - (21%)
Similarity:82/226 - (36%) Gaps:61/226 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   106 LNSQQCGYLGQRLQSVLQQQHAQHQQSQSQTPSSDDGSQSGVTILEEERRGGAAAASLFTIDSIL 170
            |..:..|.....::..||||..       ..|||.....|...||   |..|     |:| |.:.
  Fly    92 LKEENSGMFAWEIREQLQQQRV-------CDPSSVPSISSINRIL---RNSG-----LWT-DEMT 140

  Fly   171 GSRQQ--GGGTAPSQGSHISSNGNQNGLTSNGISLGLKRSGAESPASPNSNSSSSAAASP--IRP 231
            .|:|.  ....|.:..:|.:.:|..||.            |.::|..|.:.:..:.||:|  .|.
  Fly   141 SSQQNAAAAAAAAAAAAHQAGSGPSNGY------------GGQAPPPPVTVAPPTPAATPSIARY 193

  Fly   232 QRVPAMLQH--------------PGLHLGHLAAAAASGFAASPSDFLVAYPNFYPNYMHAAAVAH 282
            .:.||::.:              |.:..||     :.|...:.|...::|...:.:::...::.:
  Fly   194 AKPPALMMNSAGEMPIKPAPKMPPSMGHGH-----SHGLNPNVSGLDLSYSALHKHWLWNPSLLY 253

  Fly   283 VAAAQMQAHVSGAAAGLSGH------GHHPH 307
            ..    |||:...||...|.      |:.||
  Fly   254 YT----QAHIQAQAAASGGQFLPYAGGYLPH 280

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GscNP_001137762.2 Homeodomain 341..397 CDD:459649
PoxnNP_476686.1 HTH_ARSR 5..133 CDD:481197 13/50 (26%)
Blue background indicates that the domain is not in the aligned region.

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