DRSC/TRiP Functional Genomics Resources

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Protein Alignment: Gsc and Poxn

Sequence 1:NP_001137762.2 Gene:Gsc FlyBaseID:FBgn0010323 Length:473 Species:Drosophila melanogaster
Sequence 2:NP_001261016.1 Gene:Poxn FlyBaseID:FBgn0003130 Length:425 Species:Drosophila melanogaster

Alignment Length:226 Identity:48/227 (21%)
Similarity:82/227 (36%) Gaps:61/227 (27%)


  Fly   106 LNSQQCGYLGQRLQSVLQQQHAQHQQSQSQTPSSDDGSQSGVTILEEERRGGAAAASLFTIDSIL 170
            |..:..|.....::..||||..       ..|||.....|...||   |..|     |:| |.:.
  Fly    92 LKEENSGMFAWEIREQLQQQRV-------CDPSSVPSISSINRIL---RNSG-----LWT-DEMT 140

  Fly   171 GSRQQ--GGGTAPSQGSHISSNGNQNGLTSNGISLGLKRSGAESPASPNSNSSSSAAASP--IRP 231
            .|:|.  ....|.:..:|.:.:|..||.            |.::|..|.:.:..:.||:|  .|.
  Fly   141 SSQQNAAAAAAAAAAAAHQAGSGPSNGY------------GGQAPPPPVTVAPPTPAATPSIARY 193

  Fly   232 QRVPAMLQH--------------PGLHLGHLAAAAASGFAASPSDFLVAYPNFYPNYMHAAAVAH 282
            .:.||::.:              |.:..||     :.|...:.|...::|...:.:::...::.:
  Fly   194 AKPPALMMNSAGEMPIKPAPKMPPSMGHGH-----SHGLNPNVSGLDLSYSALHKHWLWNPSLLY 253

  Fly   283 VAAAQMQAHVSGAAAGLSGH------GHHPH 307
            ..    |||:...||...|.      |:.||
  Fly   254 YT----QAHIQAQAAASGGQFLPYAGGYLPH 280

Known Domains:


GeneSequenceDomainRegion External IDIdentity
GscNP_001137762.2 Homeobox 343..396 CDD:278475
PoxnNP_001261016.1 HTH 5..133 CDD:304362 13/51 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 C124281816
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
10.930

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