Protein Alignment Gsc and Vsx2

DIOPT Version :10

• Sequence 1: NP_001137762.2
• Gene: Gsc / 33240
• FlyBaseID: FBgn0010323
• Length: 473
• Species: Drosophila melanogaster
• Sequence 2: NP_001284897.1
• Gene: Vsx2 / 31469
• FlyBaseID: FBgn0263512
• Length: 645
• Species: Drosophila melanogaster
• Alignment Length: 311
• Identity: 99/311 - (31%)
• Similarity: 129/311 - (41%)
• Gaps: 97/311 - (31%)

  Fly   162 SLFTIDSILGSRQQGGGTAPSQGSHISSNGNQNGLTSNGISLGLKRSGAESPASPNSN-----SS 221
            |.|.|..:||........||:..:           |:.|.::..:|.....|.:.|:.     :|
  Fly     5 SPFAIQELLGLAVAAATEAPTDLT-----------TTAGATVAKERQTPTPPKTTNATMATAATS 58

  Fly   222 SSAAASPI-----------RPQRVPAMLQHPGLHLGH------------LAAAAASGFAASPSDF 263
            ::.||:|.           .||:.|...|....|  |            :..||||..|...:..
  Fly    59 AATAATPTNAAEGNLTSVSEPQQQPQQQQQEQQH--HQPHHHQYREHHQMTMAAASRMAYFNAHA 121

  Fly   264 LVAYPNFYPNYMHAAAVAHVAAAQMQAHVSGAAAGLSGHGHHPHHPHG--------------HPH 314
            .|| ..|.|:.: ||||.|....|.|.|..          ||||||||              |||
  Fly   122 AVA-AAFMPHQL-AAAVHHHHQHQHQHHPH----------HHPHHPHGAVGGPPPPPPMQHHHPH 174

  Fly   315 HPH--------------------------LGAHHHGQHHLSHLGHGP---PPKRKRRH-RTIFTE 349
            |||                          |.....|...|:..|.||   ..|:|||| |||||.
  Fly   175 HPHHPLLHAQGFPQLKSFAAGAGTCLPGSLAPKDFGMESLNGFGVGPNSKKKKKKRRHSRTIFTS 239

  Fly   350 EQLEQLEATFDKTHYPDVVLREQLALKVDLKEERVEVWFKNRRAKWRKQKR 400
            .|||:||..|.:.|||||..||.|:||.:|.|:|::|||:||||||||.::
  Fly   240 YQLEKLEEAFKEAHYPDVYAREMLSLKTELPEDRIQVWFQNRRAKWRKTEK 290

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Gsc	NP_001137762.2	Homeodomain	341..397	CDD:459649	36/56 (64%)
Vsx2	NP_001284897.1	Homeodomain	230..287	CDD:459649	36/56 (64%)
		OAR	556..572	CDD:461067