DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpI135 and NRPB2

DIOPT Version :9

Sequence 1:NP_476708.1 Gene:RpI135 / 33210 FlyBaseID:FBgn0003278 Length:1129 Species:Drosophila melanogaster
Sequence 2:NP_193902.1 Gene:NRPB2 / 828259 AraportID:AT4G21710 Length:1188 Species:Arabidopsis thaliana


Alignment Length:1213 Identity:345/1213 - (28%)
Similarity:552/1213 - (45%) Gaps:210/1213 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 VDSFDEMLTVGL----DNSAKHMI-------PNHWLSPAGEKISMKVESIWIAKPKVPQDVIDVR 93
            :|||||.:...:    |.||...|       |.|....|.....:....|:::||.:.:.  |..
plant    44 LDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTES--DGE 106

  Fly    94 TREIYPTDSRQLHVSYSGMCSV-------RLGWSVNGVQKTP--INMDLGEVPIMLRSKACNLGQ 149
            |..::|..:|..:::||....|       :.|.....|.:|.  ..:.:|:|||||||..|.|.|
plant   107 TATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLFQ 171

  Fly   150 ATPEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKDRGQNFSDLGMLVQTV 214
            .:.:::.:.||...:.||.|:|.|:||::........||....|    |.:...::.:|. |:::
plant   172 NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFK----KRQPNKYAYVGE-VRSM 231

  Fly   215 REDESSLSNV--VHYLNNGTAKFMFS--HVK-RLSY----VPVCLILKCLMDYTDEEIYNRLVQG 270
            .|:::...:.  |..|...:||...|  ::: .|.|    :|:.::.:.|....|::|...:...
plant   232 AENQNRPPSTMFVRMLARASAKGGSSGQYIRCTLPYIRTEIPIIIVFRALGFVADKDILEHICYD 296

  Fly   271 YESDQYYVSCVQAMLRE---VQNENVYTHAQCKSFIGNLFRARFPEVPEWQPDDDVTDFILRERV 332
            : :|...:..::..|.|   :||:.|     ...:||.  |.....|.:.:......| ||::.:
plant   297 F-ADTQMMELLRPSLEEAFVIQNQLV-----ALDYIGK--RGATVGVTKEKRIKYARD-ILQKEM 352

  Fly   333 MIHLDTYE----DKFQLIVFMIQKLFQCAQGKYKVENVDSAMMQEVLLPG--------HLYQKYL 385
            :.|:...|    .|.....::|.:|..||.|:...::.|....:.:.|.|        .|::| |
plant   353 LPHVGIGEHCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRK-L 416

  Fly   386 SERVESWVSQVRRCLQKKLTSPDALVTSAVMTQCMRQAGGVGRAIESFLATGNIASRTGLGLMQN 450
            :..|.|:   |::|:..         ...|..|...:|..:...::..|||||.......|....
plant   417 TRDVRSY---VQKCVDN---------GKEVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAG 469

  Fly   451 SGLVIMAENINRMRY---MSHFRAIH-----RGSYFTTMRTTEARQLLPDAWGFICPVHTPDGTP 507
                 :::.:||:.|   :||.|.::     .|      :..:.|||....||.:||..||:|..
plant   470 -----VSQVLNRLTYASTLSHLRRLNSPIGREG------KLAKPRQLHNSQWGMMCPAETPEGQA 523

  Fly   508 CGLLNHLTLTCEISMRPDPKLVKAIPKHLIDMG----------MMPLSNRRYLGEKLYVVFLDGK 562
            |||:.:|.|...|::   ......|.:.|.:.|          ::|.:.:         :|::|.
plant   524 CGLVKNLALMVYITV---GSAAYPILEFLEEWGTENFEEISPSVIPQATK---------IFVNGM 576

  Fly   563 HLGHIHQSEAEKIVDELRYGKIFGTLPQMMEIGFIPFKKNGQFPGLYIATGPARMMRPVW---NL 624
            .:| :|: :.:.:|..||  ::...:....|:|.:   ::.:...|.|.|...|..||::   |.
plant   577 WVG-VHR-DPDMLVKTLR--RLRRRVDVNTEVGVV---RDIRLKELRIYTDYGRCSRPLFIVDNQ 634

  Fly   625 K---------------------WKR------VEYIGTLEQ----LYMEIA------IDAKEMYPD 652
            |                     |..      :|||.|.|:    :.|.|:      :..:|.|.:
plant   635 KLLIKKRDIYALQQRESAEEDGWHHLVAKGFIEYIDTEEEETTMISMTISDLVQARLRPEEAYTE 699

  Fly   653 FTTHLELAKTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGT 717
            ..||.|:..:..:...|::||.||:||||||.||..||||.||....|:..:.....|.|..|..
plant   700 NYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK 764

  Fly   718 PLFRPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGF-------AY------- 768
            ||......:::.......|.|||||:..|:||:.||::|:|:::.:|||       :|       
plant   765 PLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 829

  Fly   769 GSIYKTKFLTLDKKSSYFARHPHMPELIKHLDTDGLPHPGSKLS-----YGSPLYCYFD---GEV 825
            |::.|..|...|:.|:...||....:    ||.|||..||:::|     .|.......|   |:.
plant   830 GTLVKEDFGRPDRGSTMGMRHGSYDK----LDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQS 890

  Fly   826 ATY----KVVKMDEKEDCIVESIRQLGSFDLSPKKMVAITLRVPRPATIGDKFASRAGQKGICSQ 886
            :.|    ..:.:...|..:|:.:  |.:.:....:.|.:.:|..|...|||||:||.||||....
plant   891 SRYTRRDHSISLRHSETGMVDQV--LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 953

  Fly   887 KYPAEDLPFTESGLIPDIVFNPHGFPSRMTIAMMIETMAGKGAAIHGNVYDATPFRFSEENTAID 951
            .|..||:|:|..|:.|||:.|||..||||||..:||.:.||.||..|...|||||    .:..:|
plant   954 TYTQEDMPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF----TDVTVD 1014

  Fly   952 YFGKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDKWQVRSTGAVEARTHQP 1016
            ...|.|...||...|.||:|:|..||.:||.||.|..:||||:|||.||...|..|.|:..|.||
plant  1015 NISKALHKCGYQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 1079

  Fly  1017 IKGRKRGGGVRFGEMERDALISHGAAFLLQDRLFHNSDKTHTLVCHKCGSI-LAPLQRIVKRNET 1080
            .:||.|.||:||||||||.:|:||||..|::|||..||.....||..||.| :|.|    |:|..
plant  1080 AEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEVCGLIAIANL----KKNSF 1140

  Fly  1081 GGLSSQPDTCRLCGDNSSVSMIEIPFSFKYLVTELSSVNINAR 1123
                    .||.|.:.:.:..:.||::.|.|..||.|:.|..|
plant  1141 --------ECRGCKNKTDIVQVYIPYACKLLFQELMSMAIAPR 1175

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpI135NP_476708.1 RpoB 34..1128 CDD:223163 345/1213 (28%)
RNA_pol_B_RPB2 35..1125 CDD:238353 345/1213 (28%)
RNA_pol_Rpa2_4 564..614 CDD:284335 10/49 (20%)
NRPB2NP_193902.1 PRK08565 27..1179 CDD:236291 345/1213 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0085
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D42570at2759
OrthoFinder 1 1.000 - - FOG0000346
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.820

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