Protein Alignment: RpI135 and NRPB2

• Sequence 1: NP_476708.1
• Gene: RpI135
• FlyBaseID: FBgn0003278
• Length: 1129
• Species: Drosophila melanogaster
• Sequence 2: NP_193902.1
• Gene: NRPB2
• AraportID: AT4G21710
• Length: 1188
• Species: Arabidopsis thaliana
• Alignment Length: 1213
• Identity: 345/1214 (28%)
• Similarity: 552/1214 (45%)
• Gaps: 210/1214 (17%)

  Fly    40 VDSFDEMLTVGL----DNSAKHMI-------PNHWLSPAGEKISMKVESIWIAKPKVPQDVIDVR 93
            :|||||.:...:    |.||...|       |.|....|.....:....|:::||.:.:.  |..
plant    44 LDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTES--DGE 106

  Fly    94 TREIYPTDSRQLHVSYSGMCSV-------RLGWSVNGVQKTP--INMDLGEVPIMLRSKACNLGQ 149
            |..::|..:|..:::||....|       :.|.....|.:|.  ..:.:|:|||||||..|.|.|
plant   107 TATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLFQ 171

  Fly   150 ATPEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKDRGQNFSDLGMLVQTV 214
            .:.:::.:.||...:.||.|:|.|:||::........||....|    |.:...::.:|. |:::
plant   172 NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFK----KRQPNKYAYVGE-VRSM 231

  Fly   215 REDESSLSNV--VHYLNNGTAKFMFS--HVK-RLSY----VPVCLILKCLMDYTDEEIYNRLVQG 270
            .|:::...:.  |..|...:||...|  ::: .|.|    :|:.::.:.|....|::|...:...
plant   232 AENQNRPPSTMFVRMLARASAKGGSSGQYIRCTLPYIRTEIPIIIVFRALGFVADKDILEHICYD 296

  Fly   271 YESDQYYVSCVQAMLRE---VQNENVYTHAQCKSFIGNLFRARFPEVPEWQPDDDVTDFILRERV 332
            : :|...:..::..|.|   :||:.|     ...:||.  |.....|.:.:......| ||::.:
plant   297 F-ADTQMMELLRPSLEEAFVIQNQLV-----ALDYIGK--RGATVGVTKEKRIKYARD-ILQKEM 352

  Fly   333 MIHLDTYE----DKFQLIVFMIQKLFQCAQGKYKVENVDSAMMQEVLLPG--------HLYQKYL 385
            :.|:...|    .|.....::|.:|..||.|:...::.|....:.:.|.|        .|::| |
plant   353 LPHVGIGEHCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRK-L 416

  Fly   386 SERVESWVSQVRRCLQKKLTSPDALVTSAVMTQCMRQAGGVGRAIESFLATGNIASRTGLGLMQN 450
            :..|.|:   |::|:..         ...|..|...:|..:...::..|||||.......|....
plant   417 TRDVRSY---VQKCVDN---------GKEVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAG 469

  Fly   451 SGLVIMAENINRMRY---MSHFRAIH-----RGSYFTTMRTTEARQLLPDAWGFICPVHTPDGTP 507
                 :::.:||:.|   :||.|.::     .|      :..:.|||....||.:||..||:|..
plant   470 -----VSQVLNRLTYASTLSHLRRLNSPIGREG------KLAKPRQLHNSQWGMMCPAETPEGQA 523

  Fly   508 CGLLNHLTLTCEISMRPDPKLVKAIPKHLIDMG----------MMPLSNRRYLGEKLYVVFLDGK 562
            |||:.:|.|...|::   ......|.:.|.:.|          ::|.:.:         :|::|.
plant   524 CGLVKNLALMVYITV---GSAAYPILEFLEEWGTENFEEISPSVIPQATK---------IFVNGM 576

  Fly   563 HLGHIHQSEAEKIVDELRYGKIFGTLPQMMEIGFIPFKKNGQFPGLYIATGPARMMRPVW---NL 624
            .:| :|: :.:.:|..||  ::...:....|:|.:   ::.:...|.|.|...|..||::   |.
plant   577 WVG-VHR-DPDMLVKTLR--RLRRRVDVNTEVGVV---RDIRLKELRIYTDYGRCSRPLFIVDNQ 634

  Fly   625 K---------------------WKR------VEYIGTLEQ----LYMEIA------IDAKEMYPD 652
            |                     |..      :|||.|.|:    :.|.|:      :..:|.|.:
plant   635 KLLIKKRDIYALQQRESAEEDGWHHLVAKGFIEYIDTEEEETTMISMTISDLVQARLRPEEAYTE 699

  Fly   653 FTTHLELAKTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGT 717
            ..||.|:..:..:...|::||.||:||||||.||..||||.||....|:..:.....|.|..|..
plant   700 NYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK 764

  Fly   718 PLFRPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGF-------AY------- 768
            ||......:::.......|.|||||:..|:||:.||::|:|:::.:|||       :|
plant   765 PLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 829

  Fly   769 GSIYKTKFLTLDKKSSYFARHPHMPELIKHLDTDGLPHPGSKLS-----YGSPLYCYFD---GEV 825
            |::.|..|...|:.|:...||....:    ||.|||..||:::|     .|.......|   |:.
plant   830 GTLVKEDFGRPDRGSTMGMRHGSYDK----LDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQS 890

  Fly   826 ATY----KVVKMDEKEDCIVESIRQLGSFDLSPKKMVAITLRVPRPATIGDKFASRAGQKGICSQ 886
            :.|    ..:.:...|..:|:.:  |.:.:....:.|.:.:|..|...|||||:||.||||....
plant   891 SRYTRRDHSISLRHSETGMVDQV--LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 953

  Fly   887 KYPAEDLPFTESGLIPDIVFNPHGFPSRMTIAMMIETMAGKGAAIHGNVYDATPFRFSEENTAID 951
            .|..||:|:|..|:.|||:.|||..||||||..:||.:.||.||..|...|||||    .:..:|
plant   954 TYTQEDMPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF----TDVTVD 1014

  Fly   952 YFGKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDKWQVRSTGAVEARTHQP 1016
            ...|.|...||...|.||:|:|..||.:||.||.|..:||||:|||.||...|..|.|:..|.||
plant  1015 NISKALHKCGYQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 1079

  Fly  1017 IKGRKRGGGVRFGEMERDALISHGAAFLLQDRLFHNSDKTHTLVCHKCGSI-LAPLQRIVKRNET 1080
            .:||.|.||:||||||||.:|:||||..|::|||..||.....||..||.| :|.|    |:|..
plant  1080 AEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEVCGLIAIANL----KKNSF 1140

  Fly  1081 GGLSSQPDTCRLCGDNSSVSMIEIPFSFKYLVTELSSVNINAR 1123
                    .||.|.:.:.:..:.||::.|.|..||.|:.|..|
plant  1141 --------ECRGCKNKTDIVQVYIPYACKLLFQELMSMAIAPR 1175

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RpI135	NP_476708.1	RpoB	34..1128	CDD:223163	345/1214 (28%)
		RNA_pol_B_RPB2	35..1125	CDD:238353	345/1214 (28%)
		RNA_pol_Rpa2_4	564..614	CDD:284335	10/50 (20%)
NRPB2	NP_193902.1	PRK08565	27..1179	CDD:236291	345/1214 (28%)
		RNA_pol_B_RPB2	39..1176	CDD:238353	345/1214 (28%)
		RNA_pol_Rpb2_4	571..632	CDD:282431	15/68 (22%)
		RNA_pol_Rpb2_5	657..708	CDD:282432	13/51 (25%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010				D42570at2759
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
	1	1.010