Sequence 1: | NP_476708.1 | Gene: | RpI135 / 33210 | FlyBaseID: | FBgn0003278 | Length: | 1129 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_193902.1 | Gene: | NRPB2 / 828259 | AraportID: | AT4G21710 | Length: | 1188 | Species: | Arabidopsis thaliana |
Alignment Length: | 1213 | Identity: | 345/1213 - (28%) |
---|---|---|---|
Similarity: | 552/1213 - (45%) | Gaps: | 210/1213 - (17%) |
- Green bases have known domain annotations that are detailed below.
Fly 40 VDSFDEMLTVGL----DNSAKHMI-------PNHWLSPAGEKISMKVESIWIAKPKVPQDVIDVR 93
Fly 94 TREIYPTDSRQLHVSYSGMCSV-------RLGWSVNGVQKTP--INMDLGEVPIMLRSKACNLGQ 149
Fly 150 ATPEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKDRGQNFSDLGMLVQTV 214
Fly 215 REDESSLSNV--VHYLNNGTAKFMFS--HVK-RLSY----VPVCLILKCLMDYTDEEIYNRLVQG 270
Fly 271 YESDQYYVSCVQAMLRE---VQNENVYTHAQCKSFIGNLFRARFPEVPEWQPDDDVTDFILRERV 332
Fly 333 MIHLDTYE----DKFQLIVFMIQKLFQCAQGKYKVENVDSAMMQEVLLPG--------HLYQKYL 385
Fly 386 SERVESWVSQVRRCLQKKLTSPDALVTSAVMTQCMRQAGGVGRAIESFLATGNIASRTGLGLMQN 450
Fly 451 SGLVIMAENINRMRY---MSHFRAIH-----RGSYFTTMRTTEARQLLPDAWGFICPVHTPDGTP 507
Fly 508 CGLLNHLTLTCEISMRPDPKLVKAIPKHLIDMG----------MMPLSNRRYLGEKLYVVFLDGK 562
Fly 563 HLGHIHQSEAEKIVDELRYGKIFGTLPQMMEIGFIPFKKNGQFPGLYIATGPARMMRPVW---NL 624
Fly 625 K---------------------WKR------VEYIGTLEQ----LYMEIA------IDAKEMYPD 652
Fly 653 FTTHLELAKTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGT 717
Fly 718 PLFRPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGF-------AY------- 768
Fly 769 GSIYKTKFLTLDKKSSYFARHPHMPELIKHLDTDGLPHPGSKLS-----YGSPLYCYFD---GEV 825
Fly 826 ATY----KVVKMDEKEDCIVESIRQLGSFDLSPKKMVAITLRVPRPATIGDKFASRAGQKGICSQ 886
Fly 887 KYPAEDLPFTESGLIPDIVFNPHGFPSRMTIAMMIETMAGKGAAIHGNVYDATPFRFSEENTAID 951
Fly 952 YFGKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDKWQVRSTGAVEARTHQP 1016
Fly 1017 IKGRKRGGGVRFGEMERDALISHGAAFLLQDRLFHNSDKTHTLVCHKCGSI-LAPLQRIVKRNET 1080
Fly 1081 GGLSSQPDTCRLCGDNSSVSMIEIPFSFKYLVTELSSVNINAR 1123 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
RpI135 | NP_476708.1 | RpoB | 34..1128 | CDD:223163 | 345/1213 (28%) |
RNA_pol_B_RPB2 | 35..1125 | CDD:238353 | 345/1213 (28%) | ||
RNA_pol_Rpa2_4 | 564..614 | CDD:284335 | 10/49 (20%) | ||
NRPB2 | NP_193902.1 | PRK08565 | 27..1179 | CDD:236291 | 345/1213 (28%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG0085 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D42570at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000346 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
4 | 3.820 |