DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RpI135 and NRPD2B

DIOPT Version :9

Sequence 1:NP_476708.1 Gene:RpI135 / 33210 FlyBaseID:FBgn0003278 Length:1129 Species:Drosophila melanogaster
Sequence 2:NP_188437.2 Gene:NRPD2B / 821334 AraportID:AT3G18090 Length:1055 Species:Arabidopsis thaliana


Alignment Length:1148 Identity:309/1148 - (26%)
Similarity:496/1148 - (43%) Gaps:205/1148 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 KISMKVE---SIWIAKPK--------VPQDVIDVRTREIYPTDSRQLHVSYSGMCSVRLGWSVNG 123
            |::.:||   .|.|...|        |.::::||:.::|.                         
plant    15 KVNAQVEVFKKIVIKHDKFKTGQDEYVEKEILDVKKQDIL------------------------- 54

  Fly   124 VQKTPINMDLGEVPIMLRSKACNLGQATPEEMVKHGEHDSEWGGIFVIRGNEK--IVRMLIMTRR 186
                     :|.:|:|::|..|...: ..:|..|.|....:.||.|||:|.||  |.:..:.|:|
plant    55 ---------IGSIPVMVKSVLCKTSE-KGKENCKKGNCAFDQGGYFVIKGAEKVFIAQEQMCTKR 109

  Fly   187 NHPICVKRSSWKDRGQNFSDLGMLVQTVREDESS-----LSNV--VHYLNNGTAKFMFSHVKRLS 244
               :.:..|.|....::.:.....:..:.|:|.:     :..|  |::|:              :
plant   110 ---LWISNSPWTVSFRSETKRNRFIVRLSENEKAEDYKIMEKVLTVYFLS--------------T 157

  Fly   245 YVPVCLILKCL-------------MDYTDEEIYNRLVQG-YESDQYYVSCVQAMLREVQNENVYT 295
            .:||.|:...|             .|..|..|.|.|:.. :|:|     .|....|...|...|.
plant   158 EIPVWLLFFALGVSSDKEAMDLIAFDGDDASITNSLIASIHEAD-----AVCEAFRCGNNALTYV 217

  Fly   296 HAQCKSFIGNLFRARFPEVPEWQPDDDVTDFILRERVMIHLDTYEDKFQLIVFMIQKLFQCAQGK 360
            ..|.||       .:||      |.:.|.| .||..:...|...:.|.:.:.:|::.|.....||
plant   218 EHQIKS-------TKFP------PAESVDD-CLRLYLFPCLQGLKKKARFLGYMVKCLLSAYAGK 268

  Fly   361 YKVENVDSAMMQEVLLPGHLYQKYLSERVESWVSQVRRCLQKKLTSPDAL------VTSAVMTQC 419
            .|.||.||...:.:.|.|.|.::.:...:.....::.|.:||:|:....|      :.::|:|..
plant   269 RKCENRDSFRNKRIELAGELLEREIRVHLAHARRKMTRAMQKQLSGDGDLKPIEHYLDASVITNG 333

  Fly   420 MRQAGGVGRAIESFLATGNIASRTGLGLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTT 484
            :.:|...|.....|.....:           ||:|......|.::.:...|.. |.....|.:..
plant   334 LNRAFSTGAWSHPFRKMERV-----------SGVVANLGRANPLQTLIDLRRT-RQQVLYTGKVG 386

  Fly   485 EARQLLPDAWGFICPVHTPDGTPCGLLNHLTLTCEISMRPDPKLVKAIPKHLIDMGMMPLSN--- 546
            :||...|..||.:|.:.||||..|||:.:::|...:|.:.    ::::.:.|...||..|.|   
plant   387 DARHPHPSHWGRVCFLSTPDGENCGLVKNMSLLGLVSTQG----LESVVEMLFTCGMEELMNDTS 447

  Fly   547 RRYLGEKLYVVFLDGKHLGHIHQSEAEKIVDELRYGKIFGTLPQMMEIGFIPFKKNGQFPGLYIA 611
            ....|:  :.|.|:|..:|..  :::|..|.||:..:....||..|||     |::.....:.|.
plant   448 TPLCGK--HKVLLNGDWVGLC--ADSESFVGELKSRRRQSELPLEMEI-----KRDKDDNEVRIF 503

  Fly   612 TGPARMMRP---VWNL-KWKR----------------VEYIGTLEQLYMEIAIDAKEMY--PDFT 654
            |...|::||   |.|| |.|:                :|.||..|:.....|...|::.  |...
plant   504 TDAGRLLRPLLVVENLHKLKQDKPTQYPFKHLLDQGILELIGIEEEEDCTTAWGIKQLLKEPKNY 568

  Fly   655 THLELAKTHFMSNLANLIPMPDYNQSPRNMYQCQMG-KQTMGTPCLNWPKQAANKL-YRLQTPGT 717
            ||.||..:..:.....::|..:::...|.:||.|.. :|.:|....| |....:.| .:|..|..
plant   569 THCELDLSFLLGVSCAIVPFANHDHGKRVLYQSQKHCQQAIGFSSTN-PNIRCDTLSQQLFYPQK 632

  Fly   718 PLFRPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFLTLDKK 782
            |||:.:..:.::.:....|.||||||..:.||:.||::::|||:.|||.......::....:|.|
plant   633 PLFKTLASECLEKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKAEVDTK 697

  Fly   783 SSYFARHPHMPELIK------------HLDTDGLPHPGSKLSYGSPLY--CYFDGEVATYKVVKM 833
            .|  .:...|.||::            .|:.||.|..|:.:|.|..:.  |...|  |.:. :|:
plant   698 DS--EKRKKMDELVQFGKTYSKIGKVDSLEDDGFPFIGANMSTGDIVIGRCTESG--ADHS-IKL 757

  Fly   834 DEKEDCIVESIRQLGSFDLSPKKMVAITLRVPRPATIGDKFASRAGQKGICSQKYPAEDLPFTES 898
            ...|..||:.: .|.|.| ..|...|::||..|...:||||:|..||||:.......::.|||..
plant   758 KHTERGIVQKV-VLSSND-EGKNFAAVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQ 820

  Fly   899 GLIPDIVFNPHGFPSRMTIAMMIETMAGKG------------AAIHGNVYDATPFRFSEENTAID 951
            |::||||.|||.||||.|...::|....||            ||.......||||    ....:.
plant   821 GIVPDIVINPHAFPSRQTPGQLLEAALSKGIACPIQKKEGSSAAYTKLTRHATPF----STPGVT 881

  Fly   952 YFGKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDKWQVRSTGAVEARTHQP 1016
            ...:.|...|::.:|.||:|:|..|..|.:.||.|...||||.||..:|.:.|:||.|...|.||
plant   882 EITEQLHRAGFSRWGNERVYNGRSGEMMRSLIFMGPTFYQRLVHMSENKVKFRNTGPVHPLTRQP 946

  Fly  1017 IKGRKRGGGVRFGEMERDALISHGAAFLLQDRLFHNSDKTHTLVCHKCGSILAPLQRIVKRNETG 1081
            :..|||.||:||||||||.||:|||:..|.:|||..||.:...:|.||.:    ...:::|..:.
plant   947 VADRKRFGGIRFGEMERDCLIAHGASANLHERLFTLSDSSQMHICRKCKT----YANVIERTPSS 1007

  Fly  1082 GLSSQPDTCRLCGDNSSVSMIEIPFSFKYLVTELSSVNINARF 1124
            |...:...||:|..:..|..:.:|:..|.|..||.|:.|...|
plant  1008 GRKIRGPYCRVCASSDHVVRVYVPYGAKLLCQELFSMGITLNF 1050

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpI135NP_476708.1 RpoB 34..1128 CDD:223163 309/1148 (27%)
RNA_pol_B_RPB2 35..1125 CDD:238353 309/1148 (27%)
RNA_pol_Rpa2_4 564..614 CDD:284335 13/49 (27%)
NRPD2BNP_188437.2 PRK08565 1..1046 CDD:236291 307/1142 (27%)
RNA_pol_B_RPB2 3..1051 CDD:238353 309/1148 (27%)
RNA_pol_Rpb2_4 456..517 CDD:282431 19/67 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0085
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D42570at2759
OrthoFinder 1 1.000 - - FOG0000346
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.820

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