Sequence 1: | NP_476708.1 | Gene: | RpI135 / 33210 | FlyBaseID: | FBgn0003278 | Length: | 1129 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_188437.2 | Gene: | NRPD2B / 821334 | AraportID: | AT3G18090 | Length: | 1055 | Species: | Arabidopsis thaliana |
Alignment Length: | 1148 | Identity: | 309/1148 - (26%) |
---|---|---|---|
Similarity: | 496/1148 - (43%) | Gaps: | 205/1148 - (17%) |
- Green bases have known domain annotations that are detailed below.
Fly 70 KISMKVE---SIWIAKPK--------VPQDVIDVRTREIYPTDSRQLHVSYSGMCSVRLGWSVNG 123
Fly 124 VQKTPINMDLGEVPIMLRSKACNLGQATPEEMVKHGEHDSEWGGIFVIRGNEK--IVRMLIMTRR 186
Fly 187 NHPICVKRSSWKDRGQNFSDLGMLVQTVREDESS-----LSNV--VHYLNNGTAKFMFSHVKRLS 244
Fly 245 YVPVCLILKCL-------------MDYTDEEIYNRLVQG-YESDQYYVSCVQAMLREVQNENVYT 295
Fly 296 HAQCKSFIGNLFRARFPEVPEWQPDDDVTDFILRERVMIHLDTYEDKFQLIVFMIQKLFQCAQGK 360
Fly 361 YKVENVDSAMMQEVLLPGHLYQKYLSERVESWVSQVRRCLQKKLTSPDAL------VTSAVMTQC 419
Fly 420 MRQAGGVGRAIESFLATGNIASRTGLGLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTT 484
Fly 485 EARQLLPDAWGFICPVHTPDGTPCGLLNHLTLTCEISMRPDPKLVKAIPKHLIDMGMMPLSN--- 546
Fly 547 RRYLGEKLYVVFLDGKHLGHIHQSEAEKIVDELRYGKIFGTLPQMMEIGFIPFKKNGQFPGLYIA 611
Fly 612 TGPARMMRP---VWNL-KWKR----------------VEYIGTLEQLYMEIAIDAKEMY--PDFT 654
Fly 655 THLELAKTHFMSNLANLIPMPDYNQSPRNMYQCQMG-KQTMGTPCLNWPKQAANKL-YRLQTPGT 717
Fly 718 PLFRPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFLTLDKK 782
Fly 783 SSYFARHPHMPELIK------------HLDTDGLPHPGSKLSYGSPLY--CYFDGEVATYKVVKM 833
Fly 834 DEKEDCIVESIRQLGSFDLSPKKMVAITLRVPRPATIGDKFASRAGQKGICSQKYPAEDLPFTES 898
Fly 899 GLIPDIVFNPHGFPSRMTIAMMIETMAGKG------------AAIHGNVYDATPFRFSEENTAID 951
Fly 952 YFGKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDKWQVRSTGAVEARTHQP 1016
Fly 1017 IKGRKRGGGVRFGEMERDALISHGAAFLLQDRLFHNSDKTHTLVCHKCGSILAPLQRIVKRNETG 1081
Fly 1082 GLSSQPDTCRLCGDNSSVSMIEIPFSFKYLVTELSSVNINARF 1124 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
RpI135 | NP_476708.1 | RpoB | 34..1128 | CDD:223163 | 309/1148 (27%) |
RNA_pol_B_RPB2 | 35..1125 | CDD:238353 | 309/1148 (27%) | ||
RNA_pol_Rpa2_4 | 564..614 | CDD:284335 | 13/49 (27%) | ||
NRPD2B | NP_188437.2 | PRK08565 | 1..1046 | CDD:236291 | 307/1142 (27%) |
RNA_pol_B_RPB2 | 3..1051 | CDD:238353 | 309/1148 (27%) | ||
RNA_pol_Rpb2_4 | 456..517 | CDD:282431 | 19/67 (28%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG0085 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D42570at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000346 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
5 | 4.820 |