Sequence 1: | NP_476708.1 | Gene: | RpI135 / 33210 | FlyBaseID: | FBgn0003278 | Length: | 1129 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_081699.1 | Gene: | Polr3b / 70428 | MGIID: | 1917678 | Length: | 1133 | Species: | Mus musculus |
Alignment Length: | 1208 | Identity: | 349/1208 - (28%) |
---|---|---|---|
Similarity: | 551/1208 - (45%) | Gaps: | 187/1208 - (15%) |
- Green bases have known domain annotations that are detailed below.
Fly 10 TIPVLTNSRPEFKQIPKKLSRHLANLGGPHVDSFDEMLTVGLDNSAKHMIPNHWLSPAGEKISMK 74
Fly 75 VESIWIAK--------PKVPQDVIDVRTREIYPTDSRQLHVSYSGMCSVRLGWSVNGVQKTPIN- 130
Fly 131 MDLGEVPIMLRSKACNLGQATPEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRS 195
Fly 196 SWKDRGQNFSDLGMLVQTVREDESSLSNVVHYLNNGTAKFMFSHVKRLSYVPVCLILKCLMDYTD 260
Fly 261 EEIYNRLVQGYESDQYYVSCVQAMLREVQNENVYTHAQCKSFIGNLFR-----------ARFPEV 314
Fly 315 PEWQPDDDVTDFILRERVMIHLDTYEDKFQ----LIVFMIQKLFQCAQGKYKVENVDSAMMQEVL 375
Fly 376 LPGHLYQKYLSERVESWVSQVRRCLQKKLTSPDALVTSAVMTQCMRQ---AGGVGRAIESFLATG 437
Fly 438 NIASRTGLGLMQNSGLVIMAENINRMRYMSHFRAIHR--GSYFTTMRTTEARQLLPDAWGFICPV 500
Fly 501 HTPDGTPCGLLNHLTLTCEIS--MRPDPKLVKAIPKHLIDMGMMPLSNRRYLGEKL-----YVVF 558
Fly 559 LDGKHLGHIHQSEAEKIVDELRYGKIFGTLPQMMEIGFIPFKKNGQFPGLYIATGPARMMRPVWN 623
Fly 624 LKWKR--------------------------VEYIGTLEQLYMEIAIDAKEMYPDFTTHLELAKT 662
Fly 663 HFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTPLFRPVHYDN 727
Fly 728 IQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFLTLDKKSSY------- 785
Fly 786 -----FARHPHMPELIKH--LDTDGLPHPGSKL---------SYGSPLYCYFDG----EVATYKV 830
Fly 831 VKMDEK--EDCIVESIRQLGSFDLSPKKMVAITLRVPRPATIGDKFASRAGQKGICSQKYPAEDL 893
Fly 894 PFTESGLIPDIVFNPHGFPSRMTIAMMIETMAGKGAAIHGNVYDATPFRFSEENTAIDYFGKMLE 958
Fly 959 AGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDKWQVRSTGAVEARTHQPIKGRKRG 1023
Fly 1024 GGVRFGEMERDALISHGAAFLLQDRLFHNSDKTHTLVCHKCGSILAPLQRIVKRNETGGLSSQPD 1088
Fly 1089 TCRLCGDNSSVSMIEIPFSFKYLVTELSSVNINARFKL 1126 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
RpI135 | NP_476708.1 | RpoB | 34..1128 | CDD:223163 | 344/1184 (29%) |
RNA_pol_B_RPB2 | 35..1125 | CDD:238353 | 342/1180 (29%) | ||
RNA_pol_Rpa2_4 | 564..614 | CDD:284335 | 11/49 (22%) | ||
Polr3b | NP_081699.1 | PRK08565 | 26..1129 | CDD:236291 | 346/1198 (29%) |
RNA_pol_B_RPB2 | 39..1127 | CDD:238353 | 342/1180 (29%) | ||
RNA_pol_Rpb2_4 | 539..600 | CDD:282431 | 18/67 (27%) | ||
RNA_pol_Rpb2_5 | 621..661 | CDD:282432 | 12/40 (30%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG0085 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D42570at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000346 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
4 | 3.820 |