Sequence 1: | NP_476708.1 | Gene: | RpI135 / 33210 | FlyBaseID: | FBgn0003278 | Length: | 1129 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_021323450.1 | Gene: | polr3b / 562329 | ZFINID: | ZDB-GENE-030131-2887 | Length: | 1130 | Species: | Danio rerio |
Alignment Length: | 1230 | Identity: | 359/1230 - (29%) |
---|---|---|---|
Similarity: | 557/1230 - (45%) | Gaps: | 209/1230 - (16%) |
- Green bases have known domain annotations that are detailed below.
Fly 1 MLEE-----MQQMKTIPVLTNSRPEFKQIPKKLSRHLANLGGPHVDSFDEMLTVGLDNSAKHMIP 60
Fly 61 NHWLSPAGEKISMKVESIWIAK--------PKVPQDVIDVRTREIYPTDSRQLHVSYSGMCSVRL 117
Fly 118 GWSVNGVQKTPIN-MDLGEVPIMLRSKACNLGQATPEEMVKHGEHDSEWGGIFVIRGNEKIVRML 181
Fly 182 IMTRRNHPICVKRSSWKDRGQNFSDLGMLVQTVREDESSLSNVVHYLNNGTAKFMFSHVKRLSYV 246
Fly 247 PVCLILKCLMDYTDEEIYNRLVQGYESDQYYVSCVQAMLREVQNENVYTHAQCKSFIGN-LFRAR 310
Fly 311 FPEVPEWQPDDDVTDFILRERVMIHLDTYEDKFQ----LIVFMIQKLFQCAQGKYKVENVDSAMM 371
Fly 372 QEVLLPGHLYQKYLSERVESWVSQVRRCLQKKLTSPDALVTSAVMTQCMRQ---AGGVGRAIESF 433
Fly 434 LATGNIASRTGLGLMQNSGLVIMAENINRMRYMSHFRAIHR--GSYFTTMRTTEARQLLPDAWGF 496
Fly 497 ICPVHTPDGTPCGLLNHLTLTCEIS--MRPDPKLVKAIPKHLIDMGMMPLSNRRYLGEKL----- 554
Fly 555 YVVFLDGKHLGHIHQSEAEKIVDELRYGKIFGTLPQMMEIGFIPFKKNGQFPGLYIATGPARMMR 619
Fly 620 P----------VWN----------------LKWKRVEYIGTLEQLYMEIAIDAKEMYPDFTTHLE 658
Fly 659 LAKTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTPLFRPV 723
Fly 724 HYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFLTLDKKSSYF-- 786
Fly 787 ----------ARHPHMPELIKH--LDTDGLPHPGSKLSY-----------------------GSP 816
Fly 817 LY----CYFDGEVATY--KVVKMDEKEDCIVESIRQLGSFDLSPKKMVAITLRVPRPATIGDKFA 875
Fly 876 SRAGQKGICSQKYPAEDLPFTESGLIPDIVFNPHGFPSRMTIAMMIETMAGKGAAIHGNVYDATP 940
Fly 941 FRFSEENTA----IDYFGKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDKW 1001
Fly 1002 QVRSTGAVEARTHQPIKGRKRGGGVRFGEMERDALISHGAAFLLQDRLFHNSDKTHTLVCHKCGS 1066
Fly 1067 ILAPLQRIVKRNETGGLSSQPDTCRLCGDNSSVSMIEIPFSFKYLVTELSSVNINARFKL 1126 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
RpI135 | NP_476708.1 | RpoB | 34..1128 | CDD:223163 | 349/1192 (29%) |
RNA_pol_B_RPB2 | 35..1125 | CDD:238353 | 347/1188 (29%) | ||
RNA_pol_Rpa2_4 | 564..614 | CDD:284335 | 11/49 (22%) | ||
polr3b | XP_021323450.1 | RNA_pol_B_RPB2 | 37..1124 | CDD:238353 | 347/1188 (29%) |
RNA_pol_Rpb2_4 | 536..597 | CDD:309626 | 18/67 (27%) | ||
RNA_pol_Rpb2_5 | 618..658 | CDD:309627 | 13/40 (33%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG0085 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D42570at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000346 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
ZFIN | 0 | 0.000 | Not matched by this tool. | |||
4 | 3.820 |