Sequence 1: | NP_476708.1 | Gene: | RpI135 / 33210 | FlyBaseID: | FBgn0003278 | Length: | 1129 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001099472.1 | Gene: | Polr2b / 289561 | RGDID: | 1309477 | Length: | 1174 | Species: | Rattus norvegicus |
Alignment Length: | 1234 | Identity: | 341/1234 - (27%) |
---|---|---|---|
Similarity: | 546/1234 - (44%) | Gaps: | 257/1234 - (20%) |
- Green bases have known domain annotations that are detailed below.
Fly 40 VDSFDEML------------TVGLDNSAKHMIPNHWLSPAGE-----KISMKVESIWIAKPK--- 84
Fly 85 ---VPQDVIDVRTREIYPTDSRQLHVSYSGMCSVRLGWSV---------NGVQKTPINMDLGEVP 137
Fly 138 IMLRSKACNLGQATPEEMVKHGEHDSEWGGIFVIRGNEK--IVRMLIMTRRNHPICVKRSSWKDR 200
Fly 201 GQNFSDLGMLVQTVREDESSLSNVVHYLNNGTAKFMFSH--VKRLSY----VPVCLILKCLMDYT 259
Fly 260 DEEIYNRLVQGYESDQYYVSCVQAMLRE---VQNENVYTHAQCKSFIGNLFRARFPEVPEWQPDD 321
Fly 322 DVTDFILRERVMIHLDTYE----DKFQLIVFMIQKLFQCAQGKYKVENVDSAMMQEVLLPGHLYQ 382
Fly 383 KYLSERVESWVSQVRRCLQKKL-TSPDALVTSAVMTQCMRQAGGVGRAIESFLATGNIA------ 440
Fly 441 -SRTGLGLMQNSGLVIMAENINRMRY---MSHFRAIH----RGSYFTTMRTTEARQLLPDAWGFI 497
Fly 498 CPVHTPDGTPCGLLNHLTLTCEISM--RPDP-----------KLVKAIPKHLIDMGMMPLSNRRY 549
Fly 550 LGEKLYVVFLDGKHLGHIHQSEAEKIVDELRYGKIFGTLPQMMEI--GFIPFKKNGQFPGLYIAT 612
Fly 613 GPARMMRPVW-----------------------NLKWKR------VEYIGTLEQLYMEIA----- 643
Fly 644 IDAKEM-YPDFTTHLELAKTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAAN 707
Fly 708 KLYRLQTPGTPLFRPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIY 772
Fly 773 KTKFLTLDKKSSY---------------FARHPHMPELIKHLDTDGLPHPGSKLSYGSPLYCYFD 822
Fly 823 GEVATYKVVKMDEKEDCIVESIRQLGSFDLSP---------------------KKMVAITLRVPR 866
Fly 867 PATIGDKFASRAGQKGICSQKYPAEDLPFTESGLIPDIVFNPHGFPSRMTIAMMIETMAGKGAAI 931
Fly 932 HGNVYDATPFRFSEENTAIDY--FGKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLR 994
Fly 995 HMVFDKWQVRSTGAVEARTHQPIKGRKRGGGVRFGEMERDALISHGAAFLLQDRLFHNSDKTHTL 1059
Fly 1060 VCHKCGSILAPLQRIVKRNETGGLSSQPDTCRLCGDNSSVSMIEIPFSFKYLVTELSSVNINAR 1123 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
RpI135 | NP_476708.1 | RpoB | 34..1128 | CDD:223163 | 341/1234 (28%) |
RNA_pol_B_RPB2 | 35..1125 | CDD:238353 | 341/1234 (28%) | ||
RNA_pol_Rpa2_4 | 564..614 | CDD:284335 | 11/51 (22%) | ||
Polr2b | NP_001099472.1 | PRK08565 | 27..1172 | CDD:236291 | 341/1234 (28%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG0085 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D42570at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000346 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
5 | 4.820 |