DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpI135 and Polr2b

DIOPT Version :9

Sequence 1:NP_476708.1 Gene:RpI135 / 33210 FlyBaseID:FBgn0003278 Length:1129 Species:Drosophila melanogaster
Sequence 2:NP_001099472.1 Gene:Polr2b / 289561 RGDID:1309477 Length:1174 Species:Rattus norvegicus


Alignment Length:1234 Identity:341/1234 - (27%)
Similarity:546/1234 - (44%) Gaps:257/1234 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 VDSFDEML------------TVGLDNSAKHMIPNHWLSPAGE-----KISMKVESIWIAKPK--- 84
            :|||||.:            .:.|...|:|        .:||     :..:|.|.|:::||.   
  Rat    44 LDSFDEFIQMSVQRIVEDAPPIDLQAEAQH--------ASGEVEEPPRYLLKFEQIYLSKPTHWE 100

  Fly    85 ---VPQDVIDVRTREIYPTDSRQLHVSYSGMCSVRLGWSV---------NGVQKTPINMDLGEVP 137
               .|..::        |.::|..:::||....|.:..:|         ...|||.|    |::|
  Rat   101 RDGAPSPMM--------PNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFI----GKIP 153

  Fly   138 IMLRSKACNLGQATPEEMVKHGEHDSEWGGIFVIRGNEK--IVRMLIMTRRNHPICVKRSSWKDR 200
            |||||..|.|...|..::.:..|...:.||.|:|.|:||  |.:..:.|...:....|.|.:...
  Rat   154 IMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYT 218

  Fly   201 GQNFSDLGMLVQTVREDESSLSNVVHYLNNGTAKFMFSH--VKRLSY----VPVCLILKCLMDYT 259
            |:..|   .|..:.|...:...:::.....|..|.....  |..|.|    ||:.::.:.|...:
  Rat   219 GECRS---CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVS 280

  Fly   260 DEEIYNRLVQGYESDQYYVSCVQAMLRE---VQNENVYTHAQCKSFIGNLFRARFPEVPEWQPDD 321
            |.:|...::..:| |...:..|:..|.|   :|.:||     ..:|||:  |...|.|.: :...
  Rat   281 DRDILEHIIYDFE-DPEMMEMVKPSLDEAFVIQEQNV-----ALNFIGS--RGAKPGVTK-EKRI 336

  Fly   322 DVTDFILRERVMIHLDTYE----DKFQLIVFMIQKLFQCAQGKYKVENVDSAMMQEVLLPGHLYQ 382
            .....:|::.::.|:...:    .|...:.:|:.:|...|.|:.::::.|....:.:.|.|.|..
  Rat   337 KYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 401

  Fly   383 KYLSERVESWVSQVRRCLQKKL-TSPDALVTSAVMTQCMRQAGGVGRAIESFLATGNIA------ 440
            .......::.:.:||...||.: ...|..:..|:.|:.      :...::..|||||..      
  Rat   402 FLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRI------ISDGLKYSLATGNWGDQKKAH 460

  Fly   441 -SRTGLGLMQNSGLVIMAENINRMRY---MSHFRAIH----RGSYFTTMRTTEARQLLPDAWGFI 497
             :|.|           :::.:||:.:   :||.|.::    |..     :..:.|||....||.:
  Rat   461 QARAG-----------VSQVLNRLTFASTLSHLRRLNSPIGRDG-----KLAKPRQLHNTLWGMV 509

  Fly   498 CPVHTPDGTPCGLLNHLTLTCEISM--RPDP-----------KLVKAIPKHLIDMGMMPLSNRRY 549
            ||..||:|...||:.:|.|...||:  :|.|           .|.:..|..:.|...        
  Rat   510 CPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATK-------- 566

  Fly   550 LGEKLYVVFLDGKHLGHIHQSEAEKIVDELRYGKIFGTLPQMMEI--GFIPFKKNGQFPGLYIAT 612
                   :|::|..:| ||: :.|::::.||      .|.:.|:|  ..:...::.:...:.|.|
  Rat   567 -------IFVNGCWVG-IHK-DPEQLMNTLR------KLRRQMDIIVSEVSMIRDIREREIRIYT 616

  Fly   613 GPARMMRPVW-----------------------NLKWKR------VEYIGTLEQLYMEIA----- 643
            ...|:.||:.                       |..|:.      ||||.|||:..:.:|     
  Rat   617 DAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDD 681

  Fly   644 IDAKEM-YPDFTTHLELAKTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAAN 707
            :..||: |....||.|:..:..:...|::||.||:||||||.||..||||.||....|:..:...
  Rat   682 LQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDT 746

  Fly   708 KLYRLQTPGTPLFRPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIY 772
            ..:.|..|..||......:.::..:...|.|:|||:.|||||:.||::|:|::|.:||| :.|::
  Rat   747 LAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGF-FRSVF 810

  Fly   773 KTKFLTLDKKSSY---------------FARHPHMPELIKHLDTDGLPHPGSKLSYGSPLYCYFD 822
            ...:...:.|..:               ..||    .:...||.|||..||.::|         .
  Rat   811 YRSYKEQESKKGFDQEEVFEKPTRETCQGMRH----AIYDKLDDDGLIAPGVRVS---------G 862

  Fly   823 GEVATYKVVKMDEKEDCIVESIRQLGSFDLSP---------------------KKMVAITLRVPR 866
            .:|...|.|.:.|.||.:..:.|:....|.|.                     .|...|.:|..|
  Rat   863 DDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVR 927

  Fly   867 PATIGDKFASRAGQKGICSQKYPAEDLPFTESGLIPDIVFNPHGFPSRMTIAMMIETMAGKGAAI 931
            ...||||||||.||||.|..:|..||:|||..|:.|||:.|||..||||||..:||.:.||.:|.
  Rat   928 IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSAN 992

  Fly   932 HGNVYDATPFRFSEENTAIDY--FGKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLR 994
            .|.:.|||||     |.|::.  ...:|...||:..|.|.||:|..||::|:.||.|..:||||:
  Rat   993 KGEIGDATPF-----NDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLK 1052

  Fly   995 HMVFDKWQVRSTGAVEARTHQPIKGRKRGGGVRFGEMERDALISHGAAFLLQDRLFHNSDKTHTL 1059
            |||.||...|:.|.::....||::||.|.||:||||||||..|:||||..|::|||..||.....
  Rat  1053 HMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVH 1117

  Fly  1060 VCHKCGSILAPLQRIVKRNETGGLSSQPDTCRLCGDNSSVSMIEIPFSFKYLVTELSSVNINAR 1123
            ||:.|| |:|          .....:....||.|.:.:.:|::.:|::.|.|..||.|::|..|
  Rat  1118 VCNLCG-IMA----------IANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPR 1170

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpI135NP_476708.1 RpoB 34..1128 CDD:223163 341/1234 (28%)
RNA_pol_B_RPB2 35..1125 CDD:238353 341/1234 (28%)
RNA_pol_Rpa2_4 564..614 CDD:284335 11/51 (22%)
Polr2bNP_001099472.1 PRK08565 27..1172 CDD:236291 341/1234 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0085
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D42570at2759
OrthoFinder 1 1.000 - - FOG0000346
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.820

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