DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpI135 and rpoa-2

DIOPT Version :9

Sequence 1:NP_476708.1 Gene:RpI135 / 33210 FlyBaseID:FBgn0003278 Length:1129 Species:Drosophila melanogaster
Sequence 2:NP_492476.1 Gene:rpoa-2 / 172752 WormBaseID:WBGene00008781 Length:1127 Species:Caenorhabditis elegans


Alignment Length:1124 Identity:482/1124 - (42%)
Similarity:690/1124 - (61%) Gaps:56/1124 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 HVDSFDEMLTVGLDNSAKHMIPNHWLSPAGEKISMKVESIWIAKP------KVPQDVIDVRTREI 97
            ||||||.:::.|...:|:.:....:....|:.::||..|..:.||      |:..|     |..:
 Worm     9 HVDSFDFLVSKGCQFAAQAVPAEKFRLKNGDAVTMKFTSAQLHKPTLDTGAKLTSD-----TLPL 68

  Fly    98 YPTDSRQLHVSYSGMCSVRLGWSVNGVQKTPINMDLGEVPIMLRSKACNLGQATPEEMVKHGEHD 162
            .|.:.||..::|:|...|.:...|||.:...|.:.||:|||||||:.|:|...:.:|:|..||..
 Worm    69 LPAECRQRGLTYAGNLKVGIDVHVNGSRLDIIEIILGKVPIMLRSEGCHLRGMSRKELVVAGEEP 133

  Fly   163 SEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKDRGQNFSDLGMLVQTVREDESSLSNVVHY 227
            .|.||.|::.|:||::|:||..|||.||.:.|.::|::|:.||:.|:::::|:|:.:::...:||
 Worm   134 IEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKTFKEKGKLFSEFGVMMRSVKENHTAVMMTLHY 198

  Fly   228 LNNGTAKFMFSHVKRLSYVPVCLILKCLMDYTDEEIYNRLVQGYESDQYYVSCVQAMLREVQNEN 292
            |:.||.:......:.:.|||:..|:|.|.|..|..|.....:|...||:|.||:..||.:.|.|.
 Worm   199 LDTGTMQLALQFRREIFYVPLMYIVKALTDKNDAVISAGFKRGRNQDQFYSSCILNMLAQCQEEE 263

  Fly   293 VYTHAQCKSFIGNLFRARFPE-VPEWQPDDDVTDFILRERVMIHLDTYEDKFQLIVFMIQKLFQC 356
            :.........||:.||....: |..|:.|.:...||:||.|:||||:.|:||..:.:|.|||...
 Worm   264 ILNQEAAIRAIGSRFRVAVSDRVAPWEDDLEAGRFIIRECVLIHLDSDEEKFHTLAYMTQKLIAL 328

  Fly   357 AQGKYKVENVDSAMMQEVLLPGHLYQKYLSERVESWVSQVRRCLQKKLTSPDALVTSAVMTQCM- 420
            .:|:...|..|:...||..:.||:....|.||:|:.:..|||.|:...:..|.::|||.:.:.: 
 Worm   329 VKGECAPETPDNPQFQEASVSGHILLLILRERMENIIGMVRRKLEYMSSRKDFILTSAAILKALG 393

  Fly   421 -RQAGGVGRAIESFLATGNIASRTGLGLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTT 484
             ...|.:.|.:..||||||:.:|.||.|.|.||..::||.||::|::|||||||||::|..||||
 Worm   394 NHTGGEITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTT 458

  Fly   485 EARQLLPDAWGFICPVHTPDGTPCGLLNHLTLTCEISMRPDPKLVKAIPKHLIDMGMM------- 542
            :.|:|.|:|||||||||||||.|||||||:|.:|.|.  .|......:|..|.::||.       
 Worm   459 DVRKLRPEAWGFICPVHTPDGAPCGLLNHVTASCRIV--TDLSDNSNVPSLLAELGMYTHKTVAL 521

  Fly   543 --PLSNRRYLGEKLYVVFLDGKHLGHIHQSEAEKIVDELRYGKIF--GTLPQMMEIGFIPFK--- 600
              |       ||:||.|.::|:.||::..::|..|...||..|:.  ..:|...||..:...   
 Worm   522 APP-------GEELYPVLMNGRFLGYVPITKAASIERYLRCAKVAKDARIPYTSEIALVRRSTDI 579

  Fly   601 KN--GQFPGLYIATGPARMMRPVWNLKWKRVEYIGTLEQLYMEIAIDAKEMYPDFTTHLELAKTH 663
            ||  .|:||:||.:...|::|||.||....||:|||.||:|:.:.:|.:|..|..|.|.||..:.
 Worm   580 KNIQTQYPGIYILSDAGRLIRPVRNLAMDAVEHIGTFEQVYLSVVLDPEEAEPGVTMHQELHPSC 644

  Fly   664 FMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTPLFRPVHYDNI 728
            ..|...||||.||:||||||:||||||||||||....|..:|.||:||||.|..|:.:...|:..
 Worm   645 LFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTAVHAWHSRADNKMYRLQFPQQPMLKLEAYEKY 709

  Fly   729 QLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTK---FLTLDKKSSYFARHP 790
            ::|::.:||||.|||||||||||||||.||||:|:||||:|::.|.:   .:|..::.:.|.|:|
 Worm   710 EMDEYPLGTNACVAVISYTGYDMEDAMTINKASYQRGFAHGTVIKVERINLVTERERKTIFYRNP 774

  Fly   791 HMPELIKHLDTDGLPHPGSKLSYGSPLYCYFDGEVATYKVVKMDEKED--CIVESIRQLGSFDLS 853
            .  |.||.:..||||.||.:.......|..|:.|...::..|....|.  |.:..|.:.|..| |
 Worm   775 R--EEIKTVGPDGLPIPGRRYFLDEVYYVTFNMETGDFRTHKFHYAEPAYCGLVRIVEQGEGD-S 836

  Fly   854 PKKMVAITLRVPRPATIGDKFASRAGQKGICSQKYPAEDLPFTESGLIPDIVFNPHGFPSRMTIA 918
            ..|...|..|:.|...||||||||.|||||.|..:|.|.|||:|:|::|||:||||||||||||.
 Worm   837 GAKHALIQWRIERNPIIGDKFASRHGQKGINSFLWPVESLPFSETGMVPDIIFNPHGFPSRMTIG 901

  Fly   919 MMIETMAGKGAAIHGNVYDATPFRFSEENTAIDYFGKMLEAGGYNYYGTERLYSGVDGREMTADI 983
            ||||:||||.||.||..|||:||.|:|:||||::||::|...||||||.|..|||||||:|...|
 Worm   902 MMIESMAGKAAATHGENYDASPFVFNEDNTAINHFGELLTKAGYNYYGNETFYSGVDGRQMEMQI 966

  Fly   984 FFGVVHYQRLRHMVFDKWQVRSTGAVEARTHQPIKGRKRGGGVRFGEMERDALISHGAAFLLQDR 1048
            |||:|:|||||||:.||:|||:||.::..||||:||||:|||:|||||||||:|:||.:|:||||
 Worm   967 FFGIVYYQRLRHMIADKFQVRATGPIDPITHQPVKGRKKGGGIRFGEMERDAIIAHGTSFVLQDR 1031

  Fly  1049 LFHNSDKTHTLVCHKCGSILAPLQRI--------VKRNETGGLS-SQPDTCRLCGDNSSVSMIEI 1104
            |.:.||:.....|.:|||:|:.|...        .||.:...|. ::...||.|..:..|.::::
 Worm  1032 LLNCSDRDVAYACRRCGSLLSVLMSSRAGSHLLKKKRKDDEPLDYTETQRCRTCDKDDQVFLLQV 1096

  Fly  1105 PFSFKYLVTELSSVNINAR 1123
            |..|:||..||:::|:..:
 Worm  1097 PRVFRYLTAELAAMNVKIK 1115

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpI135NP_476708.1 RpoB 34..1128 CDD:223163 482/1124 (43%)
RNA_pol_B_RPB2 35..1125 CDD:238353 482/1124 (43%)
RNA_pol_Rpa2_4 564..614 CDD:284335 17/56 (30%)
rpoa-2NP_492476.1 RNA_pol_B_RPB2 5..1116 CDD:238353 482/1124 (43%)
RpoB 9..1116 CDD:223163 482/1124 (43%)
RNA_pol_Rpb2_2 <216..339 CDD:282427 44/122 (36%)
RNA_pol_Rpa2_4 538..595 CDD:284335 17/56 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160159257
Domainoid 1 1.000 388 1.000 Domainoid score I412
eggNOG 1 0.900 - - E1_COG0085
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H7133
Inparanoid 1 1.050 890 1.000 Inparanoid score I197
Isobase 1 0.950 - 0 Normalized mean entropy S774
OMA 1 1.010 - - QHG53969
OrthoDB 1 1.010 - - D42570at2759
OrthoFinder 1 1.000 - - FOG0000346
OrthoInspector 1 1.000 - - oto17393
orthoMCL 1 0.900 - - OOG6_102249
Panther 1 1.100 - - LDO PTHR20856
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1173
SonicParanoid 1 1.000 - - X3081
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1716.750

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