Sequence 1: | NP_476708.1 | Gene: | RpI135 / 33210 | FlyBaseID: | FBgn0003278 | Length: | 1129 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_492476.1 | Gene: | rpoa-2 / 172752 | WormBaseID: | WBGene00008781 | Length: | 1127 | Species: | Caenorhabditis elegans |
Alignment Length: | 1124 | Identity: | 482/1124 - (42%) |
---|---|---|---|
Similarity: | 690/1124 - (61%) | Gaps: | 56/1124 - (4%) |
- Green bases have known domain annotations that are detailed below.
Fly 39 HVDSFDEMLTVGLDNSAKHMIPNHWLSPAGEKISMKVESIWIAKP------KVPQDVIDVRTREI 97
Fly 98 YPTDSRQLHVSYSGMCSVRLGWSVNGVQKTPINMDLGEVPIMLRSKACNLGQATPEEMVKHGEHD 162
Fly 163 SEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKDRGQNFSDLGMLVQTVREDESSLSNVVHY 227
Fly 228 LNNGTAKFMFSHVKRLSYVPVCLILKCLMDYTDEEIYNRLVQGYESDQYYVSCVQAMLREVQNEN 292
Fly 293 VYTHAQCKSFIGNLFRARFPE-VPEWQPDDDVTDFILRERVMIHLDTYEDKFQLIVFMIQKLFQC 356
Fly 357 AQGKYKVENVDSAMMQEVLLPGHLYQKYLSERVESWVSQVRRCLQKKLTSPDALVTSAVMTQCM- 420
Fly 421 -RQAGGVGRAIESFLATGNIASRTGLGLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTT 484
Fly 485 EARQLLPDAWGFICPVHTPDGTPCGLLNHLTLTCEISMRPDPKLVKAIPKHLIDMGMM------- 542
Fly 543 --PLSNRRYLGEKLYVVFLDGKHLGHIHQSEAEKIVDELRYGKIF--GTLPQMMEIGFIPFK--- 600
Fly 601 KN--GQFPGLYIATGPARMMRPVWNLKWKRVEYIGTLEQLYMEIAIDAKEMYPDFTTHLELAKTH 663
Fly 664 FMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTPLFRPVHYDNI 728
Fly 729 QLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTK---FLTLDKKSSYFARHP 790
Fly 791 HMPELIKHLDTDGLPHPGSKLSYGSPLYCYFDGEVATYKVVKMDEKED--CIVESIRQLGSFDLS 853
Fly 854 PKKMVAITLRVPRPATIGDKFASRAGQKGICSQKYPAEDLPFTESGLIPDIVFNPHGFPSRMTIA 918
Fly 919 MMIETMAGKGAAIHGNVYDATPFRFSEENTAIDYFGKMLEAGGYNYYGTERLYSGVDGREMTADI 983
Fly 984 FFGVVHYQRLRHMVFDKWQVRSTGAVEARTHQPIKGRKRGGGVRFGEMERDALISHGAAFLLQDR 1048
Fly 1049 LFHNSDKTHTLVCHKCGSILAPLQRI--------VKRNETGGLS-SQPDTCRLCGDNSSVSMIEI 1104
Fly 1105 PFSFKYLVTELSSVNINAR 1123 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
RpI135 | NP_476708.1 | RpoB | 34..1128 | CDD:223163 | 482/1124 (43%) |
RNA_pol_B_RPB2 | 35..1125 | CDD:238353 | 482/1124 (43%) | ||
RNA_pol_Rpa2_4 | 564..614 | CDD:284335 | 17/56 (30%) | ||
rpoa-2 | NP_492476.1 | RNA_pol_B_RPB2 | 5..1116 | CDD:238353 | 482/1124 (43%) |
RpoB | 9..1116 | CDD:223163 | 482/1124 (43%) | ||
RNA_pol_Rpb2_2 | <216..339 | CDD:282427 | 44/122 (36%) | ||
RNA_pol_Rpa2_4 | 538..595 | CDD:284335 | 17/56 (30%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C160159257 | |
Domainoid | 1 | 1.000 | 388 | 1.000 | Domainoid score | I412 |
eggNOG | 1 | 0.900 | - | - | E1_COG0085 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 1 | 1.000 | - | - | H7133 | |
Inparanoid | 1 | 1.050 | 890 | 1.000 | Inparanoid score | I197 |
Isobase | 1 | 0.950 | - | 0 | Normalized mean entropy | S774 |
OMA | 1 | 1.010 | - | - | QHG53969 | |
OrthoDB | 1 | 1.010 | - | - | D42570at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000346 | |
OrthoInspector | 1 | 1.000 | - | - | oto17393 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_102249 | |
Panther | 1 | 1.100 | - | - | LDO | PTHR20856 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R1173 |
SonicParanoid | 1 | 1.000 | - | - | X3081 | |
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 1 | 0.960 | - | - | ||
17 | 16.750 |