Sequence 1: | NP_476708.1 | Gene: | RpI135 / 33210 | FlyBaseID: | FBgn0003278 | Length: | 1129 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001121521.1 | Gene: | polr3b / 100158643 | XenbaseID: | XB-GENE-5799940 | Length: | 1134 | Species: | Xenopus tropicalis |
Alignment Length: | 1205 | Identity: | 353/1205 - (29%) |
---|---|---|---|
Similarity: | 557/1205 - (46%) | Gaps: | 169/1205 - (14%) |
- Green bases have known domain annotations that are detailed below.
Fly 5 MQQMKTIPVLTNSRPEFKQIPKKLSRHLANLGGPHVDSFDEMLTVGLDNSAKHMIPNHWLSPAGE 69
Fly 70 KISMKVESIWIAK--------PKVPQDVIDVRTREIYPTDSRQLHVSYSGMCSVRLGWSVNGVQK 126
Fly 127 TPIN-MDLGEVPIMLRSKACNLGQATPEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNHPI 190
Fly 191 CVKRSSWKDRGQNFSDLGMLVQTVREDESSLSNVVHYLNNGTAKFMFSHVKRLSYVPVCLILKCL 255
Fly 256 MDYTDEEIYNRLVQGYESDQYYVSCVQAMLREVQNENVYTHAQCKSFIGNLFRAR---FPEVPEW 317
Fly 318 QPDDDVTDFILRERVMIHLDTYEDKFQ----LIVFMIQKLFQCAQGKYKVENVDSAMMQEVLLPG 378
Fly 379 HLYQKYLSERVESWVSQVRRCLQKKLTSPDALVTSAVMTQCMRQ---AGGVGRAIESFLATGNIA 440
Fly 441 SRTGLGLMQNSGLVIMAENINRMRYMSHFRAIHR--GSYFTTMRTTEARQLLPDAWGFICPVHTP 503
Fly 504 DGTPCGLLNHLTLTCEIS--MRPDPKLVKAIPKHLIDMGMMPLSNRRYLGEKL-----YVVFLDG 561
Fly 562 KHLGHIHQSEAEKIVDELRYGKIFGTLPQMMEIGFIPFKKNGQFPGLYIATGPARMMRPVWNLKW 626
Fly 627 KR--------------------------VEYIGTLEQLYMEIAIDAKEMYPDFTTHLELAKTHFM 665
Fly 666 SNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTPLFRPVHYDNIQL 730
Fly 731 DDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFLTLDKKSSYFARHPHMP-- 793
Fly 794 ------ELIKH--LDTDGLPHPGSKLS-------------YGSPLYCYFDGEVATYKVVKMDEK- 836
Fly 837 -EDCIVESIRQLGSFDLSPKKMVAITLRVPRPATIGDKFASRAGQKGICSQKYPAEDLPFTESGL 900
Fly 901 IPDIVFNPHGFPSRMTIAMMIETMAGKGAAIHGNVYDATPFRFSEENTA----IDYFGKMLEAGG 961
Fly 962 YNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDKWQVRSTGAVEARTHQPIKGRKRGGGV 1026
Fly 1027 RFGEMERDALISHGAAFLLQDRLFHNSDKTHTLVCHKCGSILAPLQRIVKRNETGGLSSQPDTCR 1091
Fly 1092 LCGDNSSVSMIEIPFSFKYLVTELSSVNINARFKL 1126 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
RpI135 | NP_476708.1 | RpoB | 34..1128 | CDD:223163 | 348/1176 (30%) |
RNA_pol_B_RPB2 | 35..1125 | CDD:238353 | 346/1172 (30%) | ||
RNA_pol_Rpa2_4 | 564..614 | CDD:284335 | 11/49 (22%) | ||
polr3b | NP_001121521.1 | RNA_pol_B_RPB2 | 39..1128 | CDD:238353 | 346/1172 (30%) |
RNA_pol_Rpb2_4 | 540..601 | CDD:377386 | 18/67 (27%) | ||
RNA_pol_Rpb2_5 | 622..662 | CDD:367996 | 10/40 (25%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D42570at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000346 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 2.010 |