DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt6 and PSMC3

DIOPT Version :10

Sequence 1:NP_608447.1 Gene:Rpt6 / 33105 FlyBaseID:FBgn0020369 Length:405 Species:Drosophila melanogaster
Sequence 2:NP_002795.2 Gene:PSMC3 / 5702 HGNCID:9549 Length:439 Species:Homo sapiens


Alignment Length:399 Identity:177/399 - (44%)
Similarity:242/399 - (60%) Gaps:34/399 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 EELQLVVAEKHQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVK-----PMDKKKV--L 85
            |.|::...|..|..|.|.::...:.::|..:..|||.::::.....|.:|     |.....|  |
Human    32 EVLKMSTEEIIQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIEL 96

  Fly    86 VKVHP----EGKFVVDLDKN-----------------------IDINDVTPNCRVALRNESYTLH 123
            :.|.|    |....:|||..                       :|...:.|...|.:..:||.:.
Human    97 LDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLIL 161

  Fly   124 KILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLY 188
            :.||.:.|..|..|.|::.|...|..:|||||||:|:.|.|.||:.|.|.|:.|||..|||||:|
Human   162 ETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMY 226

  Fly   189 GPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSI 253
            |||||||||||||.|..|:.||::::|.:|||.|||:|:::||:.|.:|:|.||||||:||:|:|
Human   227 GPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAI 291

  Fly   254 GSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPP 318
            |:.|.:|...||.||||||||||||||||:....:|||.||||:|||||||||.||:|||||||.
Human   292 GTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPM 356

  Fly   319 PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFE 383
            ||||||..|::|||||||::..:|..::|......:||:.|.||.||||.|||.....:|.||:.
Human   357 PNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYM 421

  Fly   384 MAVAKVMQK 392
            ..:.:|..|
Human   422 EGILEVQAK 430

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt6NP_608447.1 PRK03992 23..399 CDD:179699 177/399 (44%)
PSMC3NP_002795.2 PRK03992 39..432 CDD:179699 175/392 (45%)

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