DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt6 and psmc3

DIOPT Version :10

Sequence 1:NP_608447.1 Gene:Rpt6 / 33105 FlyBaseID:FBgn0020369 Length:405 Species:Drosophila melanogaster
Sequence 2:NP_001006786.1 Gene:psmc3 / 448481 XenbaseID:XB-GENE-1009848 Length:423 Species:Xenopus tropicalis


Alignment Length:399 Identity:177/399 - (44%)
Similarity:242/399 - (60%) Gaps:34/399 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 EELQLVVAEKHQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVK-----PMDKKKV--L 85
            |.|::...|..|..|.|.::...:.::|..:..|||.::::.....|.:|     |.....|  |
 Frog    16 EVLKMSTEEIIQRTRLLDSEIKIMKSEVLRVTHELQAMRDKIKENSEKIKVNKTLPYLVSNVIEL 80

  Fly    86 VKVHP----EGKFVVDLDKN-----------------------IDINDVTPNCRVALRNESYTLH 123
            :.|.|    |....:|||..                       :|...:.|...|.:..:||.:.
 Frog    81 LDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLIL 145

  Fly   124 KILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLY 188
            :.||.:.|..|..|.|::.|...|..:|||||||:|:.|.|.||:.|.|.|:.|||..|||||:|
 Frog   146 ETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMY 210

  Fly   189 GPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSI 253
            |||||||||||||.|..|:.||::::|.:|||.|||:|:::||:.|.:|:|.||||||:||:|:|
 Frog   211 GPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAI 275

  Fly   254 GSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPP 318
            |:.|.:|...||.||||||||||||||||:....:|||.||||:|||||||||.||:|||||||.
 Frog   276 GTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPM 340

  Fly   319 PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFE 383
            ||||||..|::|||||||::..:|..::|......:||:.|.||.||||.|||.....:|.||:.
 Frog   341 PNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYM 405

  Fly   384 MAVAKVMQK 392
            ..:.:|..|
 Frog   406 EGILEVQAK 414

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt6NP_608447.1 PRK03992 23..399 CDD:179699 177/399 (44%)
psmc3NP_001006786.1 PRK03992 23..416 CDD:179699 175/392 (45%)

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