DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt6 and Psmc3

DIOPT Version :10

Sequence 1:NP_608447.1 Gene:Rpt6 / 33105 FlyBaseID:FBgn0020369 Length:405 Species:Drosophila melanogaster
Sequence 2:NP_113783.2 Gene:Psmc3 / 29677 RGDID:61905 Length:442 Species:Rattus norvegicus


Alignment Length:399 Identity:177/399 - (44%)
Similarity:242/399 - (60%) Gaps:34/399 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 EELQLVVAEKHQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVK-----PMDKKKV--L 85
            |.|::...|..|..|.|.::...:.::|..:..|||.::::.....|.:|     |.....|  |
  Rat    35 EVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIEL 99

  Fly    86 VKVHP----EGKFVVDLDKN-----------------------IDINDVTPNCRVALRNESYTLH 123
            :.|.|    |....:|||..                       :|...:.|...|.:..:||.:.
  Rat   100 LDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLIL 164

  Fly   124 KILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLY 188
            :.||.:.|..|..|.|::.|...|..:|||||||:|:.|.|.||:.|.|.|:.|||..|||||:|
  Rat   165 ETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMY 229

  Fly   189 GPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSI 253
            |||||||||||||.|..|:.||::::|.:|||.|||:|:::||:.|.:|:|.||||||:||:|:|
  Rat   230 GPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAI 294

  Fly   254 GSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPP 318
            |:.|.:|...||.||||||||||||||||:....:|||.||||:|||||||||.||:|||||||.
  Rat   295 GTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPM 359

  Fly   319 PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFE 383
            ||||||..|::|||||||::..:|..::|......:||:.|.||.||||.|||.....:|.||:.
  Rat   360 PNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYM 424

  Fly   384 MAVAKVMQK 392
            ..:.:|..|
  Rat   425 EGILEVQAK 433

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt6NP_608447.1 PRK03992 23..399 CDD:179699 177/399 (44%)
Psmc3NP_113783.2 PRK03992 42..435 CDD:179699 175/392 (45%)

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