DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt6 and Psmc2

DIOPT Version :10

Sequence 1:NP_608447.1 Gene:Rpt6 / 33105 FlyBaseID:FBgn0020369 Length:405 Species:Drosophila melanogaster
Sequence 2:NP_150239.2 Gene:Psmc2 / 25581 RGDID:3428 Length:433 Species:Rattus norvegicus


Alignment Length:388 Identity:190/388 - (48%)
Similarity:254/388 - (65%) Gaps:23/388 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 RSYYIQKIEELQLVVAEKHQNLRRLQAQRNELNA-----------KVRMLREELQLLQ-EQGSYV 72
            :|.|.::|::::       .::::|..:.|||..           .:..|..:.|.|| ||...|
  Rat    38 QSTYSRQIKQVE-------DDIQQLLKKINELTGIKESDTGLAPPALWDLAADKQTLQSEQPLQV 95

  Fly    73 GEVVK----PMDKKKVLVKVHPEGKFVVDLDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPL 133
            ....|    ..:..|.::.|....||||||...:...|:....||.:....|.:|..||.|:||.
  Rat    96 ARCTKIINADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPT 160

  Fly   134 VSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 198
            |::|.||:.||.||..|||..:||::::||:|.|:.|||.|..|||..||||||:|||||||||.
  Rat   161 VTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLC 225

  Fly   199 ARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSG 263
            |||||:.|:..||||.|||||||::|||:|||||||.|||.....:||.||||:||.:|.:.|:|
  Rat   226 ARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAG 290

  Fly   264 GDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDIL 328
            ||:|||||||||:||||||:...||||:|||||.|.|||||:||||:||||||..|:.|.|..|.
  Rat   291 GDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIF 355

  Fly   329 KIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 391
            |||:|.|::.|.|....:|.|.|.::|||::.|||||||:|:|.||...|::||..||.||::
  Rat   356 KIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIK 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt6NP_608447.1 PRK03992 23..399 CDD:179699 189/385 (49%)
Psmc2NP_150239.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..22
PRK03992 44..430 CDD:179699 188/382 (49%)
Blue background indicates that the domain is not in the aligned region.

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