DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt6 and Katna1

DIOPT Version :10

Sequence 1:NP_608447.1 Gene:Rpt6 / 33105 FlyBaseID:FBgn0020369 Length:405 Species:Drosophila melanogaster
Sequence 2:NP_035965.3 Gene:Katna1 / 23924 MGIID:1344353 Length:491 Species:Mus musculus


Alignment Length:314 Identity:120/314 - (38%)
Similarity:175/314 - (55%) Gaps:46/314 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   128 NKVD------PLVSLM---MVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP- 182
            ||.|      .||..:   ::.:.|:..:..:..|.:..|.::|.:.||:..||.|.  ||.:| 
Mouse   180 NKFDGTGYDKDLVEALERDIISQNPNVRWYDIADLVEAKKLLQEAVVLPMWMPEFFK--GIRRPW 242

  Fly   183 KGVLLYGPPGTGKTLLARAVAHHTEC--TFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSII 245
            ||||:.|||||||||||:|||  |||  ||..||.|.|..|:.||..::||.||.|||.::|:.|
Mouse   243 KGVLMVGPPGTGKTLLAKAVA--TECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATI 305

  Fly   246 FMDEIDSIGSSRIESGSGGDSEVQRTM-LELLNQLDGF-------EATKNIKVIMATNRIDILDP 302
            |:||||||.|.|   |:..:.|..|.| .|||.|:||.       :.:|.:.|:.|||....:|.
Mouse   306 FIDEIDSICSRR---GTSEEHEASRRMKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDE 367

  Fly   303 ALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGM 367
            ||.|  |::::|..|.|:.:.|.::|:|..|::.|...:||..|||.|.|.|||::..||.:|.:
Mouse   368 ALRR--RLEKRIYIPLPSAKGREELLRISLRELELADDVNLASIAENMEGYSGADITNVCRDASL 430

  Fly   368 YALRER---------------RVHV--TQEDFEMAVAKVMQKDSEKNMSIKKLW 404
            .|:|.|               .:|:  |.||||||:.|:.:..|..::...:.|
Mouse   431 MAMRRRIEGLTPEEIRNLSREAMHMPTTMEDFEMALKKISKSVSAADIERYEKW 484

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt6NP_608447.1 PRK03992 23..399 CDD:179699 119/307 (39%)
Katna1NP_035965.3 Interaction with microtubules, sufficient for microtubule severing activity. /evidence=ECO:0000269|PubMed:28436967 1..185 3/4 (75%)
Interaction with dynein and NDEL1. /evidence=ECO:0000250 1..75
Interaction with KATNB1 1..29
Kp60-NTD 4..72 CDD:439297
SpoVK 61..469 CDD:440232 117/297 (39%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 101..182 1/1 (100%)
RecA-like_KTNA1 210..379 CDD:410930 80/177 (45%)
Vps4_C <456..489 CDD:462762 10/29 (34%)
Blue background indicates that the domain is not in the aligned region.

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