DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt6 and rpt-1

DIOPT Version :10

Sequence 1:NP_608447.1 Gene:Rpt6 / 33105 FlyBaseID:FBgn0020369 Length:405 Species:Drosophila melanogaster
Sequence 2:NP_506005.1 Gene:rpt-1 / 179641 WormBaseID:WBGene00004501 Length:435 Species:Caenorhabditis elegans


Alignment Length:396 Identity:186/396 - (46%)
Similarity:250/396 - (63%) Gaps:29/396 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 QKIEELQLVVAEKH------QNLRRLQAQRNELNAKVRML-------------------REELQL 64
            |.::|..:.|.:::      :.|:.|.|.......||..|                   .::..:
 Worm    25 QALDEGDIAVLKRYGQGPYAEQLKTLDADIENCLKKVNELSGVKESDTGLAPPALWDIAADKQAM 89

  Fly    65 LQEQGSYVGEVVKPMDKKK----VLVKVHPEGKFVVDLDKNIDINDVTPNCRVALRNESYTLHKI 125
            .|||...|....|.:...|    .|:.|....||||||..::...|:....||.:....|.:|..
 Worm    90 QQEQPLQVARCTKIITSDKHDPRYLINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHLP 154

  Fly   126 LPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGP 190
            ||.|:||.|::|.||:.||.||..|||...||::::||:|.|:.|||.:..|||..|||||||||
 Worm   155 LPAKIDPTVTMMQVEEKPDVTYSDVGGCKDQIEKLREVVETPLLHPERYVNLGIEPPKGVLLYGP 219

  Fly   191 PGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGS 255
            |||||||.|||||:.|:..||||.|||||||::|||:|||||||.|||.....:||.||||::|.
 Worm   220 PGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAVGG 284

  Fly   256 SRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPN 320
            :|.:.|.|||:|||||||||:||||||:...||||:|||||.|.|||||:||||:|||:||..|:
 Worm   285 ARFDDGQGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFALPD 349

  Fly   321 EEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMA 385
            ...|..|||||:::|::.|.|....:|.|.|.::|||::.|||||||:|:|.||...|::||..|
 Worm   350 LAGRAHILKIHAKQMSVERDIRYDLLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLEA 414

  Fly   386 VAKVMQ 391
            :.||::
 Worm   415 INKVVK 420

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt6NP_608447.1 PRK03992 23..399 CDD:179699 186/396 (47%)
rpt-1NP_506005.1 PRK03992 117..420 CDD:179699 170/302 (56%)

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