DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab35 and rab12

DIOPT Version :10

Sequence 1:NP_608373.1 Gene:Rab35 / 33014 FlyBaseID:FBgn0031090 Length:201 Species:Drosophila melanogaster
Sequence 2:XP_002937521.2 Gene:rab12 / 779581 XenbaseID:XB-GENE-492791 Length:248 Species:Xenopus tropicalis


Alignment Length:198 Identity:84/198 - (42%)
Similarity:130/198 - (65%) Gaps:13/198 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 RGFDHLFKLLIIGDSGVGKSSLLIRFSDDTFSGSYITTIGVDFKIRTVDIEGMRVKLQIWDTAGQ 67
            |..|...:::|||..||||:||:.||:||||..:..:|:||||||:||::.|.:::|||||||||
 Frog    41 RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQ 105

  Fly    68 ERFRTITSTYYRGTHGVIVVYDVTNGESFANVRRWLEEIQNNC-DVVKKVLVGNKND-DPDRKVV 130
            |||.:|||.|||...|:|:|||:|..|:|.::.:|::.|.... :..:.:|||||.| :.||::.
 Frog   106 ERFNSITSAYYRSAKGIILVYDITKKETFEDLPKWMKMIDKYASEEAELLLVGNKLDCETDREIT 170

  Fly   131 ITEDAQRFAKQM-DIELFETSAKDNINVENMFLSITRQVLDHKLRTSP-----NEQQKDTLHLKP 189
             .:..::||:|: .:...|.|||||.||:.:||    :::|..|:..|     :|.....|.|:|
 Frog   171 -RQQGEKFAQQITGMRFCEASAKDNFNVDEIFL----KLVDDILKKMPLDLVRSELSNSILSLQP 230

  Fly   190 NPK 192
            .|:
 Frog   231 EPE 233

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab35NP_608373.1 Rab35 3..201 CDD:133310 84/198 (42%)
rab12XP_002937521.2 P-loop containing Nucleoside Triphosphate Hydrolases 47..248 CDD:476819 82/192 (43%)

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