Protein Alignment htk and arid3c

DIOPT Version :10

• Sequence 1: NP_573330.3
• Gene: htk / 32877
• FlyBaseID: FBgn0085451
• Length: 2486
• Species: Drosophila melanogaster
• Sequence 2: XP_005165415.1
• Gene: arid3c / 569444
• ZFINID: ZDB-GENE-060526-12
• Length: 599
• Species: Danio rerio
• Alignment Length: 526
• Identity: 123/526 - (23%)
• Similarity: 208/526 - (39%)
• Gaps: 93/526 - (17%)

  Fly   136 GNPVVGGRRGRRRGHLNEDSSEDDDESDAKEV---VNEKEENIGKVVCVETESKKKDKE------ 191
            |:|:      .||.  ..|..::|||.|..|:   ::::|.::.:...:......:|.|
Zfish   110 GHPL------ERRA--ESDIDDEDDEDDDPELDRGMDDEERDMDEDDSMNEGGGDEDLEGPLAHY 166

  Fly   192 ----KWFPALVVAPTAQATVRIRVKDEYLVRSFKDGRYYTVPKKEAT--EFTREVASKQDVPAVQ 250
                ..:|....:|.:......||:..|......:......|:.::.  |:|.|...||......
Zfish   167 PPRHAVYPGAGQSPKSTPIHLSRVQPPYPAPRQAESPSALAPQAQSQHHEWTYEEQFKQSGQGSG 231

  Fly   251 AALEFLDSSVLPAHWDRDSLFGLTNISS--DDEGEIDSDSSDDEPHEEKDRFVAQLYKYMDDRGT 313
            ...:..||||         .||....||  .:..|:|.|       |::..|:..|:.:|..|||
Zfish   232 PGRKLKDSSV---------AFGGGGSSSLIQELYELDDD-------EKRKEFLDDLFSFMQKRGT 280

  Fly   314 PLNKVPSILSRDVDLYRLFRAVQKRGGYNRVTSQNQWKLIAMRLGFTPCTVSVMNLVKQAYKKFL 378
            |:|::|.:..:.:|||.|::.|.::||...|.::..|:.|...|.......|....::..|.|:|
Zfish   281 PVNRIPIMAKQVLDLYTLYKLVTEKGGLVEVINKKIWREITKGLNLPTSITSAAFTLRTQYMKYL 345

  Fly   379 QPYGDFHRKLGC-SMLMTSRNSNRSKGRSLVRANSVASPKPMETMKTETISKLAQPN-------- 434
            .||....|.|.. ..|..:.:|||.:||.....:::.:..|:.|.......||..|:
Zfish   346 YPYECEKRGLSSPGELQAAIDSNRREGRRQSYGSTLFNYSPVGTPTLLASPKLQMPHISMPTPNG 410

  Fly   435 ----QTNVVASTSSSAAAA---------SVAASSTPARAVSTASQSAA--EESGNTSESSVVVEP 484
                ||..:....|..::.         |:|...:.|:|.:.|:..||  |:.....||.   ||
Zfish   411 GHMTQTPGIKKEDSMLSSCLTNRVGIPMSLAGHHSAAQAAAAAAVQAAALEQLREKLESG---EP 472

  Fly   485 PKKQRKGSAASSQQGKVKSLVEKYEEKSTAVQATSSGTVAGSGASASAAAMPTTSAAASTATNLS 549
            |:|            ||..:.|  |::.....|......|.:........:........||.|||
Zfish   473 PEK------------KVMLMAE--EQQRIMQHALQQNLFAMATQLPMNIKLNNRDDRQETALNLS 523

  Fly   550 SATSGGSATIATTAMNKDAESDLPLAKIKAAAVAAASTR----HSMEKETN---ISS--GSSASA 605
              |:|.|:...:..:|....:.:..|:..|.....:|.|    ||.:.::|   :||  ..|:||
Zfish   524 --TNGISSINMSIEINGVVYTGVLFARKPAIGFMPSSQRVHHQHSSQGKSNSPGLSSHIQPSSSA 586

  Fly   606 SSKANS 611
            ||.|:|
Zfish   587 SSSASS 592

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
htk	NP_573330.3	Tudor_ARID4_rpt1	10..60	CDD:410460
		Tudor_ARID4_rpt2	65..118	CDD:410461
		RBB1NT	170..263	CDD:462390	18/104 (17%)
		ARID	296..381	CDD:460187	24/84 (29%)
		CBD_RBP1_like	698..758	CDD:350843
arid3c	XP_005165415.1	ARID_ARID3	253..369	CDD:350631	34/122 (28%)