DRSC/TRiP Functional Genomics Resources

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Protein Alignment htk and Arid3c

DIOPT Version :10

Sequence 1:NP_573330.3 Gene:htk / 32877 FlyBaseID:FBgn0085451 Length:2486 Species:Drosophila melanogaster
Sequence 2:NP_001167452.1 Gene:Arid3c / 502946 RGDID:1560943 Length:410 Species:Rattus norvegicus


Alignment Length:434 Identity:98/434 - (22%)
Similarity:151/434 - (34%) Gaps:111/434 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   126 QLPLTHPEHFGNPVVGGRRGRRRGHLNEDSSEDDDESDAKEVVNEKEENIGKVVCVETESKKKDK 190
            :|||..|     |::|.|                       .:...|..:|.|...|.|..::|:
  Rat    23 RLPLPQP-----PLLGAR-----------------------TLQAPEGALGVVGAEEEEGAEEDE 59

  Fly   191 EKWFPALVVAPTAQATVRIRVKDEYLVRSFKDGRYYTVPKKEATEFTREVASKQDVPAVQAALEF 255
            |...|.              |::|...:|....|....|..::             |.:|     
  Rat    60 EGETPL--------------VEEETAEQSHPGARCPNSPSGQS-------------PGIQ----- 92

  Fly   256 LDSSVLPAHWDRDSLFGLTNISSDDEGEIDSDSSDDEPHEEKDRFVAQLYKYMDDRGTPLNKVPS 320
                  |..|..:..|       ....|:|:|       .::..|:..|:.:|..||||:|:||.
  Rat    93 ------PHEWTYEEQF-------KQLYELDAD-------PKRKEFLDDLFSFMQKRGTPVNRVPI 137

  Fly   321 ILSRDVDLYRLFRAVQKRGGYNRVTSQNQWKLIAMRLGFTPCTVSVMNLVKQAYKKFLQPYGDFH 385
            :..:.:|||.|||.|..:||...|.::..|:.:...|.......|....::..|.|:|.||....
  Rat   138 MAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSLPTTITSAAFTLRTQYMKYLYPYECET 202

  Fly   386 RKLGC-SMLMTSRNSNRSKGR----SLVRANSVASPKPMETMKTETISKLAQPNQTNVVASTSSS 445
            |.|.. ..|..:.:|||.:||    :.|...::|.|.|.......:....|.....|...||..|
  Rat   203 RALSSPGELQAAIDSNRREGRRQAYTTVPLFNLAGPTPRGAPGPASSHGPAPTTTPNCPGSTQGS 267

  Fly   446 AAAASVAASSTPARAVSTASQSAA--EESG---------------NTSESSVVVEPPKKQR--KG 491
                   ||..||.|.:..|.|..  ||||               ...|.....|||:|:.  .|
  Rat   268 -------ASGLPAHACAQLSPSPVKKEESGIPPPRLAIPVGLALEAAREKLAPEEPPEKRAVLMG 325

  Fly   492 SAASSQQGKVKSLVEKYEEKSTAVQATSSGTVAGSGASASAAAM 535
            .....:.|...|.:.:.:......:......:||||.|:...|:
  Rat   326 PMDPPRLGATPSFLPRGKAPLREERLDGPLNLAGSGISSINMAL 369

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
htkNP_573330.3 Tudor_ARID4_rpt1 10..60 CDD:410460
Tudor_ARID4_rpt2 65..118 CDD:410461
RBB1NT 170..263 CDD:462390 15/92 (16%)
ARID 296..381 CDD:460187 26/84 (31%)
CBD_RBP1_like 698..758 CDD:350843
Arid3cNP_001167452.1 ARID 99..225 CDD:355778 40/139 (29%)
Blue background indicates that the domain is not in the aligned region.

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