DRSC/TRiP Functional Genomics Resources

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Protein Alignment htk and Arid5a

DIOPT Version :10

Sequence 1:NP_573330.3 Gene:htk / 32877 FlyBaseID:FBgn0085451 Length:2486 Species:Drosophila melanogaster
Sequence 2:XP_063123215.1 Gene:Arid5a / 316327 RGDID:1311041 Length:639 Species:Rattus norvegicus


Alignment Length:438 Identity:86/438 - (19%)
Similarity:140/438 - (31%) Gaps:143/438 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   280 DEGEI----------DSDSSDDEP------------HEEKDRFVAQLYKYMDDRGTPLNKVPSIL 322
            :||::          |..|....|            .||:..|:..|||:|.:|.||:.:||.:.
  Rat    14 EEGDLQEPPVSPKPQDEQSKSQSPIQLEDSPKAGGEQEEEQAFLVSLYKFMKERHTPIERVPHLG 78

  Fly   323 SRDVDLYRLFRAVQKRGGYNRVTSQNQWKLIAMRLGFTPCTVSVMNLVKQAYKKFLQPYGDFHRK 387
            .:.::|:::::||:|.|.|..||.:..||.:...||.:|.:.|.....::.|:           :
  Rat    79 FKQINLWKIYKAVEKLGAYELVTGRRLWKNVYDELGGSPGSTSAATCTRRHYE-----------R 132

  Fly   388 LG-CSMLMTSRNSNRSKGR---------------------------------SLVRANSVASPKP 418
            :| ||.....:.:.::.|.                                 ..||.......||
  Rat   133 VGICSKTRKEQKALKTAGEPEGLWGRPPEASCDEQQLSFWWWTHWLLPRLVLPYVRHLKGEDDKP 197

  Fly   419 METMKTETISKLAQPNQTNVVASTSSSAAAASVAASSTPARAVSTASQSAAEESGNTSESSVVVE 483
            :...|.....|:|:                 .:.........:..|..|...::..|:.     |
  Rat   198 LPPTKPRKQYKMAK-----------------ELRGDDGATEKLKKAKDSEERQADQTTS-----E 240

  Fly   484 PPKKQRKGSAASSQQGKVKSLVEKYEEKSTAVQATSSGTVAGSGASASAAAMPTTSAAASTATNL 548
            ..|....|.....:||..:...|:.            |.|:||    |...:...|...:....|
  Rat   241 KTKSDAPGQTQLPRQGSSRDSTEQL------------GPVSGS----SPPFLGANSCPEAYKRLL 289

  Fly   549 SSATSGGSATIATTAMNKDAESDLPLAKIK-AAAVAAAST--------RHSMEKETNISSGSSAS 604
            :|....|:..|.:           ||||.| .|.|:.|..        ||...........||.:
  Rat   290 ASFYCKGAHGIMS-----------PLAKKKLLAQVSKAEALQCQEEGCRHGARSPNKDLQESSQN 343

  Fly   605 ASSKANSAEMQRSRDASPSVAAPP----SAGASTS-----GAAATAQT 643
            ....|.::|.|         ..||    :.|.||.     |...||.|
  Rat   344 PRGLAENSEHQ---------LTPPEGLRAPGGSTGVEAQVGPCPTAPT 382

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
htkNP_573330.3 Tudor_ARID4_rpt1 10..60 CDD:410460
Tudor_ARID4_rpt2 65..118 CDD:410461
RBB1NT 170..263 CDD:462390
ARID 296..381 CDD:460187 26/84 (31%)
CBD_RBP1_like 698..758 CDD:350843
Arid5aXP_063123215.1 None
Blue background indicates that the domain is not in the aligned region.

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